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Report for CCDS1470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1470.1 Public Homo sapiens 1 IL20 24 110 108 CCDS HistoryNCBI Gene:50604Re-query CCDS DB by CCDS ID:1470.1Re-query CCDS DB by GeneID:50604See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1470.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367096.7 ENSP00000356063.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367096.7Link to Ensembl Protein Viewer:ENSP00000356063.3Re-query CCDS DB by Nucleotide ID:ENST00000367096Re-query CCDS DB by Protein ID:ENSP00000356063
Original member Current member EBI ENST00000367098.6 ENSP00000356065.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367098.6Link to Ensembl Protein Viewer:ENSP00000356065.1Re-query CCDS DB by Nucleotide ID:ENST00000367098Re-query CCDS DB by Protein ID:ENSP00000356065
Original member Current member NCBI NM_001385166.1 NP_001372095.1 Accepted alive Link to Nucleotide Sequence:NM_001385166.1Link to Protein Sequence:NP_001372095.1Re-query CCDS DB by Nucleotide ID:NM_001385166Re-query CCDS DB by Protein ID:NP_001372095Link to BLAST:NP_001372095.1
Original member Current member NCBI NM_001385167.1 NP_001372096.1 Accepted alive Link to Nucleotide Sequence:NM_001385167.1Link to Protein Sequence:NP_001372096.1Re-query CCDS DB by Nucleotide ID:NM_001385167Re-query CCDS DB by Protein ID:NP_001372096Link to BLAST:NP_001372096.1
Original member Current member NCBI NM_018724.4 NP_061194.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018724.4Link to Protein Sequence:NP_061194.2Re-query CCDS DB by Nucleotide ID:NM_018724Re-query CCDS DB by Protein ID:NP_061194Link to BLAST:NP_061194.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001372095.1 176 Q9NYY1-1 176 100% 0 0
NP_001372096.1 176 Q9NYY1-1 176 100% 0 0
NP_061194.2 176 Q9NYY1-1 176 100% 0 0

Chromosomal Locations for CCDS 1470.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 206865853 206866011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206866299 206866364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206866484 206866636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206867384 206867458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206868487 206868564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGAAAGCCTCTAGTCTTGCCTTCAGCCTTCTCTCTGCTGCGTTTTATCTCCTATGGACTCCTTCCACTG
GACTGAAGACACTCAATTTGGGAAGCTGTGTGATCGCCACAAACCTTCAGGAAATACGAAATGGATTTTC
TGAGATACGGGGCAGTGTGCAAGCCAAAGATGGAAACATTGACATCAGAATCTTAAGGAGGACTGAGTCT
TTGCAAGACACAAAGCCTGCGAATCGATGCTGCCTCCTGCGCCATTTGCTAAGACTCTATCTGGACAGGG
TATTTAAAAACTACCAGACCCCTGACCATTATACTCTCCGGAAGATCAGCAGCCTCGCCAATTCCTTTCT
TACCATCAAGAAGGACCTCCGGCTCTGTCATGCCCACATGACATGCCATTGTGGGGAGGAAGCAATGAAG
AAATACAGCCAGATTCTGAGTCACTTTGAAAAGCTGGAACCTCAGGCAGCAGTTGTGAAGGCTTTGGGGG
AACTAGACATTCTTCTGCAATGGATGGAGGAGACAGAATAG

Translation (176 aa):
MKASSLAFSLLSAAFYLLWTPSTGLKTLNLGSCVIATNLQEIRNGFSEIRGSVQAKDGNIDIRILRRTES
LQDTKPANRCCLLRHLLRLYLDRVFKNYQTPDHYTLRKISSLANSFLTIKKDLRLCHAHMTCHCGEEAMK
KYSQILSHFEKLEPQAAVVKALGELDILLQWMEETE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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