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Report for CCDS13401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13401.1 Public Homo sapiens 20 TP53RK 24 110 108 CCDS HistoryNCBI Gene:112858Re-query CCDS DB by CCDS ID:13401.1Re-query CCDS DB by GeneID:112858See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13401.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372114.4 ENSP00000361186.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372114.4Link to Ensembl Protein Viewer:ENSP00000361186.3Re-query CCDS DB by Nucleotide ID:ENST00000372114Re-query CCDS DB by Protein ID:ENSP00000361186
Original member Current member NCBI NM_033550.4 NP_291028.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033550.4Link to Protein Sequence:NP_291028.3Re-query CCDS DB by Nucleotide ID:NM_033550Re-query CCDS DB by Protein ID:NP_291028Link to BLAST:NP_291028.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_291028.3 253 Q96S44 253 100% 0 0

Chromosomal Locations for CCDS 13401.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 46686753 46687231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46689132 46689414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGGCGGCGGCCAGAGCTACTACGCCGGCCGATGGCGAGGAGCCCGCCCCGGAGGCTGAGGCTCTGGCCG
CAGCCCGGGAGCGGAGCAGCCGCTTCTTGAGCGGCCTGGAGCTGGTGAAGCAGGGTGCCGAGGCGCGCGT
GTTCCGTGGCCGCTTCCAGGGCCGCGCGGCGGTGATCAAGCACCGCTTCCCCAAGGGCTACCGGCACCCG
GCGCTGGAGGCGCGGCTTGGCAGACGGCGGACGGTGCAGGAGGCCCGGGCGCTCCTCCGCTGTCGCCGCG
CTGGAATATCTGCCCCAGTTGTCTTTTTTGTGGACTATGCTTCCAACTGCTTATATATGGAAGAAATTGA
AGGCTCAGTGACTGTTCGAGATTATATTCAGTCCACTATGGAGACTGAAAAAACTCCCCAGGGTCTCTCC
AACTTAGCCAAGACAATTGGGCAGGTTTTGGCTCGAATGCACGATGAAGACCTCATTCATGGTGATCTCA
CCACCTCCAACATGCTCCTGAAACCCCCCCTGGAACAGCTGAACATTGTGCTCATAGACTTTGGGCTGAG
TTTCATTTCAGCACTTCCAGAGGATAAGGGAGTAGACCTCTATGTCCTGGAGAAGGCCTTCCTCAGTACC
CATCCCAACACTGAAACTGTGTTTGAAGCCTTTCTGAAGAGCTACTCCACCTCCTCCAAAAAGGCCAGGC
CAGTGCTAAAAAAATTAGATGAAGTGCGCCTGAGAGGAAGAAAGAGGTCCATGGTTGGGTAG

Translation (253 aa):
MAAARATTPADGEEPAPEAEALAAARERSSRFLSGLELVKQGAEARVFRGRFQGRAAVIKHRFPKGYRHP
ALEARLGRRRTVQEARALLRCRRAGISAPVVFFVDYASNCLYMEEIEGSVTVRDYIQSTMETEKTPQGLS
NLAKTIGQVLARMHDEDLIHGDLTTSNMLLKPPLEQLNIVLIDFGLSFISALPEDKGVDLYVLEKAFLST
HPNTETVFEAFLKSYSTSSKKARPVLKKLDEVRLRGRKRSMVG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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