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Report for CCDS1278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1278.1 Public Homo sapiens 1 BLZF1 24 110 108 CCDS HistoryNCBI Gene:8548Re-query CCDS DB by CCDS ID:1278.1Re-query CCDS DB by GeneID:8548See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1278.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329281.6 ENSP00000327541.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000329281.6Link to Ensembl Protein Viewer:ENSP00000327541.2Re-query CCDS DB by Nucleotide ID:ENST00000329281Re-query CCDS DB by Protein ID:ENSP00000327541
Original member Current member EBI ENST00000367808.8 ENSP00000356782.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367808.8Link to Ensembl Protein Viewer:ENSP00000356782.3Re-query CCDS DB by Nucleotide ID:ENST00000367808Re-query CCDS DB by Protein ID:ENSP00000356782
Original member Current member NCBI NM_001320973.2 NP_001307902.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001320973.2Link to Protein Sequence:NP_001307902.1Re-query CCDS DB by Nucleotide ID:NM_001320973Re-query CCDS DB by Protein ID:NP_001307902Link to BLAST:NP_001307902.1
Original member Current member NCBI NM_003666.4 NP_003657.1 Accepted alive Link to Nucleotide Sequence:NM_003666.4Link to Protein Sequence:NP_003657.1Re-query CCDS DB by Nucleotide ID:NM_003666Re-query CCDS DB by Protein ID:NP_003657Link to BLAST:NP_003657.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307902.1 400 Q9H2G9-1 400 100% 0 0
NP_003657.1 400 Q9H2G9-1 400 100% 0 0

Chromosomal Locations for CCDS 1278.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 169369523 169369550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169376540 169376979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169378330 169378529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169380481 169380609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169382062 169382281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169386997 169387182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGACTACTAAAAATTTAGAAACCAAAGTCACCGTTACTTCATCCCCAATCCGAGGAGCAGGAGATGGAA
TGGAAACTGAGGAACCACCTAAATCTGTTGAAGTTACCTCCGGAGTCCAATCTAGAAAGCATCATAGTCT
TCAGAGTCCATGGAAGAAAGCAGTTCCATCAGAGAGCCCAGGAGTTCTTCAGCTAGGGAAAATGCTCACT
GAAAAAGCAATGGAAGTTAAAGCTGTAAGAATATTAGTTCCCAAAGCTGCTATAACTCATGATATCCCCA
ACAAAAATACAAAGGTTAAGTCTCTGGGACATCATAAAGGAGAATTCCTTGGTCAGTCAGAGGGAGTTAT
AGAACCTAATAAGGAACTCTCAGAGGTAAAGAATGTATTGGAAAAGCTCAAGAATTCTGAAAGAAGGTTA
CTACAGGACAAAGAAGGTCTTTCAAACCAGCTCCGTGTACAGACAGAGGTAAATCGTGAGTTAAAAAAGT
TACTGGTGGCTTCTGTTGGGGATGATCTTCAGTATCACTTTGAACGTCTAGCCCGTGAGAAAAATCAGCT
TATTTTAGAAAATGAAGCCCTAGGTCGAAACACAGCTCAGCTTTCTGAACAGTTAGAACGTATGTCAATA
CAGTGTGATGTATGGCGAAGTAAATTCCTTGCAAGCAGGGTAATGGCAGATGAGTTAACCAACTCAAGAG
CAGCTTTACAGCGTCAAAACCGTGATGCACACGGGGCTATACAAGATCTCCTAAGTGAACGGGAACAGTT
TCGTCAAGAAATGATAGCTACCCAGAAATTATTGGAGGAGCTCTTAGTTTCCTTGCAATGGGGAAGAGAG
CAAACTTACTCCCCTAGTGTACAACCCCACAGCACAGCAGAGCTAGCATTAACAAATCACAAGTTGGCAA
AAGCAGTAAATTCTCATCTTCTGGGAAATGTTGGCATTAACAATCAAAAAAAGATTCCATCAACAGTTGA
ATTCTGCAGCACCCCAGCTGAGAAAATGGCTGAAACGGTTCTAAGAATTTTAGATCCAGTTACCTGCAAA
GAGAGTTCACCTGATAATCCATTTTTTGAGTCTTCACCAACCACCTTACTTGCTACAAAGAAAAATATTG
GACGATTTCATCCCTATACTAGATATGAAAATATAACTTTCAATTGCTGCAATCACTGCCGGGGAGAACT
GATTGCCCTTTAA

Translation (400 aa):
MTTKNLETKVTVTSSPIRGAGDGMETEEPPKSVEVTSGVQSRKHHSLQSPWKKAVPSESPGVLQLGKMLT
EKAMEVKAVRILVPKAAITHDIPNKNTKVKSLGHHKGEFLGQSEGVIEPNKELSEVKNVLEKLKNSERRL
LQDKEGLSNQLRVQTEVNRELKKLLVASVGDDLQYHFERLAREKNQLILENEALGRNTAQLSEQLERMSI
QCDVWRSKFLASRVMADELTNSRAALQRQNRDAHGAIQDLLSEREQFRQEMIATQKLLEELLVSLQWGRE
QTYSPSVQPHSTAELALTNHKLAKAVNSHLLGNVGINNQKKIPSTVEFCSTPAEKMAETVLRILDPVTCK
ESSPDNPFFESSPTTLLATKKNIGRFHPYTRYENITFNCCNHCRGELIAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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