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Report for CCDS12765.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12765.1 Public Homo sapiens 19 PIH1D1 24 110 108 CCDS HistoryNCBI Gene:55011Re-query CCDS DB by CCDS ID:12765.1Re-query CCDS DB by GeneID:55011See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12765.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262265.10 ENSP00000262265.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262265.10Link to Ensembl Protein Viewer:ENSP00000262265.4Re-query CCDS DB by Nucleotide ID:ENST00000262265Re-query CCDS DB by Protein ID:ENSP00000262265
Original member Current member EBI ENST00000596049.5 ENSP00000470445.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000596049.5Link to Ensembl Protein Viewer:ENSP00000470445.1Re-query CCDS DB by Nucleotide ID:ENST00000596049Re-query CCDS DB by Protein ID:ENSP00000470445
Original member Current member NCBI NM_017916.3 NP_060386.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017916.3Link to Protein Sequence:NP_060386.1Re-query CCDS DB by Nucleotide ID:NM_017916Re-query CCDS DB by Protein ID:NP_060386Link to BLAST:NP_060386.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060386.1 290 Q9NWS0-1 290 100% 0 0

Chromosomal Locations for CCDS 12765.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 49446382 49446423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49446551 49446694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49447024 49447099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49447338 49447467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49447827 49447908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49448001 49448062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49449475 49449654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49450782 49450848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49451485 49451574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGGCGAACCCGAAGCTGCTGGGAATGGGGCTAAGCGAGGCGGAGGCGATCGGTGCTGATTCGGCGCGAT
TTGAGGAGCTGCTGCTGCAGGCCTCGAAGGAGCTCCAGCAAGCCCAGACAACCAGACCAGAATCGACACA
AATCCAGCCTCAGCCTGGTTTCTGCATAAAGACCAACTCCTCGGAAGGGAAGGTTTTCATCAACATCTGC
CACTCCCCCTCTATCCCTCCTCCCGCCGACGTGACCGAGGAGGAGCTGCTTCAGATGCTAGAGGAGGACC
AAGCTGGGTTTCGCATCCCCATGAGTCTGGGAGAGCCTCATGCAGAACTGGATGCAAAAGGCCAGGGATG
TACCGCCTACGACGTAGCTGTCAACAGCGACTTCTACCGGAGGATGCAGAACAGCGATTTCTTGCGGGAG
CTCGTGATCACCATCGCCAGGGAGGGCCTTGAGGACAAATACAACTTGCAGCTGAATCCGGAATGGCGCA
TGATGAAGAACCGGCCATTCATGGGCTCCATCTCGCAGCAGAACATCCGCTCGGAGCAGCGTCCTCGGAT
CCAGGAGCTGGGGGACCTGTACACGCCCGCCCCCGGGAGAGCTGAGTCAGGGCCTGAAAAGCCTCACCTG
AACCTGTGGCTGGAAGCCCCCGACCTCCTCTTGGCCGAAGTTGACCTCCCCAAACTGGATGGAGCCCTGG
GGCTGTCGCTGGAGATCGGGGAGAACCGCCTGGTGATGGGGGGCCCCCAGCAGCTGTATCATCTAGACGC
TTATATCCCGCTGCAGATCAACTCTCATGAGAGCAAGGCAGCCTTCCACCGGAAGAGAAAGCAATTAATG
GTGGCCATGCCGCTTCTGCCGGTGCCTTCTTGA

Translation (290 aa):
MANPKLLGMGLSEAEAIGADSARFEELLLQASKELQQAQTTRPESTQIQPQPGFCIKTNSSEGKVFINIC
HSPSIPPPADVTEEELLQMLEEDQAGFRIPMSLGEPHAELDAKGQGCTAYDVAVNSDFYRRMQNSDFLRE
LVITIAREGLEDKYNLQLNPEWRMMKNRPFMGSISQQNIRSEQRPRIQELGDLYTPAPGRAESGPEKPHL
NLWLEAPDLLLAEVDLPKLDGALGLSLEIGENRLVMGGPQQLYHLDAYIPLQINSHESKAAFHRKRKQLM
VAMPLLPVPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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