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Report for CCDS11996.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11996.2 Public Homo sapiens 18 CCDC102B 24 110 108 CCDS HistoryNCBI Gene:79839Re-query CCDS DB by CCDS ID:11996.2Re-query CCDS DB by GeneID:79839See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11996.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360242.9 ENSP00000353377.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360242.9Link to Ensembl Protein Viewer:ENSP00000353377.5Re-query CCDS DB by Nucleotide ID:ENST00000360242Re-query CCDS DB by Protein ID:ENSP00000353377
Original member Current member NCBI NM_001093729.2 NP_001087198.2 Accepted alive Link to Nucleotide Sequence:NM_001093729.2Link to Protein Sequence:NP_001087198.2Re-query CCDS DB by Nucleotide ID:NM_001093729Re-query CCDS DB by Protein ID:NP_001087198Link to BLAST:NP_001087198.2
Original member Current member NCBI NM_024781.3 NP_079057.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024781.3Link to Protein Sequence:NP_079057.3Re-query CCDS DB by Nucleotide ID:NM_024781Re-query CCDS DB by Protein ID:NP_079057Link to BLAST:NP_079057.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001087198.2 513 Q68D86-1 513 100% 0 0
NP_079057.3 513 Q68D86-1 513 100% 0 0

Chromosomal Locations for CCDS 11996.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 68836764 68837369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 68838706 68838926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 68846313 68846421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 68874669 68874785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 68897219 68897428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69010934 69011104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69054030 69054137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1542 nt):
ATGAATTTAGATTCCATACATCGATTAATTGAGGAAACACAGATCTTCCAGATGCAACAATCATCAATTA
AGTCACGCGGCGACATGGTGGCACCTGCCTCACCCCCCAGGGATACCTGTAATACCTGCTTCCCACTTCA
TGGGCTACAATCTCATGCTGCTCACAATTTCTGTGCTCACTCATATAACACCAACAAATGGGATATTTGT
GAAGAACTTCGCCTGCGGGAGCTTGAAGAAGTCAAGGCCAGAGCTGCTCAGATGGAAAAGACCATGCGGT
GGTGGTCGGACTGCACTGCCAACTGGAGAGAAAAATGGAGTAAAGTTCGAGCTGAAAGGAACAGTGCCAG
GGAGGAAGGAAGACAACTCAGAATAAAACTAGAGATGGCGATGAAAGAATTGAGTACACTGAAAAAGAAA
CAGAGTTTGCCACCTCAGAAGGAGGCATTAGAAGCTAAAGTTACCCAGGATCTGAAGCTTCCTGGCTTCG
TAGAAGAATCCTGTGAACATACAGACCAATTTCAATTGAGTTCACAAATGCATGAGTCTATCAGAGAGTA
TTTGGTAAAAAGACAATTTTCTACAAAGGAGGACACAAATAATAAGGAACAAGGTGTGGTTATTGATTCT
CTAAAATTAAGTGAGGAGATGAAGCCCAATCTAGATGGTGTTGATTTATTCAACAATGGTGGTTCTGGAA
ACGGTGAAACGAAAACTGGGCTGAGACTGAAAGCAATAAATCTGCCTTTGGAAAATGAAGTAACTGAAAT
TTCAGCTTTGCAGGTGCATTTGGATGAATTCCAAAAAATCTTATGGAAGGAAAGAGAAATGCGCACAGCT
TTGGAAAAAGAAATAGAGAGACTGGAGTCGGCTTTGTCTCTGTGGAAGTGGAAGTATGAAGAACTGAAAG
AATCAAAGCCAAAAAATGTGAAAGAGTTTGACATTCTTCTTGGTCAACATAATGATGAAATGCAAGAACT
GTCAGGCAATATAAAGGAAGAATCCAAATCTCAAAACAGCAAAGACAGAGTGATTTGTGAGTTAAGAGCA
GAGCTAGAGAGATTGCAAGCTGAAAATACCTCGGAGTGGGACAAGAGGGAAATACTTGAAAGAGAAAAGC
AGGGACTGGAGAGAGAAAATAGAAGGCTGAAGATCCAGGTGAAAGAAATGGAAGAGCTTTTGGATAAGAA
AAATAGATTAAGTGCAAACTCTCAAAGTCCTGATTTCAAGATGTCACAAATTGATCTGCAAGAAAAAAAC
CAGGAATTACTGAACCTTCAACATGCCTACTATAAACTAAACAGACAATACCAGGCAAATATTGCAGAAC
TGACTCATGCAAACAACCGAGTGGATCAAAATGAAGCAGAAGTAAAGAAACTAAGATTACGAGTGGAAGA
ACTAAAGCAGGGACTCAATCAAAAAGAAGATGAGCTTGATGATTCCCTGAATCAGATCCGTAAGCTCCAG
AGGTCTCTGGATGAAGAGAAAGAAAGAAATGAAAACTTAGAGACTGAACTCAGGCACTTGCAAAACTGGT
AA

Translation (513 aa):
MNLDSIHRLIEETQIFQMQQSSIKSRGDMVAPASPPRDTCNTCFPLHGLQSHAAHNFCAHSYNTNKWDIC
EELRLRELEEVKARAAQMEKTMRWWSDCTANWREKWSKVRAERNSAREEGRQLRIKLEMAMKELSTLKKK
QSLPPQKEALEAKVTQDLKLPGFVEESCEHTDQFQLSSQMHESIREYLVKRQFSTKEDTNNKEQGVVIDS
LKLSEEMKPNLDGVDLFNNGGSGNGETKTGLRLKAINLPLENEVTEISALQVHLDEFQKILWKEREMRTA
LEKEIERLESALSLWKWKYEELKESKPKNVKEFDILLGQHNDEMQELSGNIKEESKSQNSKDRVICELRA
ELERLQAENTSEWDKREILEREKQGLERENRRLKIQVKEMEELLDKKNRLSANSQSPDFKMSQIDLQEKN
QELLNLQHAYYKLNRQYQANIAELTHANNRVDQNEAEVKKLRLRVEELKQGLNQKEDELDDSLNQIRKLQ
RSLDEEKERNENLETELRHLQNW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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