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Report for CCDS11232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11232.1 Public Homo sapiens 17 FOXN1 24 110 108 CCDS HistoryNCBI Gene:8456Re-query CCDS DB by CCDS ID:11232.1Re-query CCDS DB by GeneID:8456See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11232.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000226247.2 ENSP00000226247.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000226247.2Link to Ensembl Protein Viewer:ENSP00000226247.2Re-query CCDS DB by Nucleotide ID:ENST00000226247Re-query CCDS DB by Protein ID:ENSP00000226247
Original member Current member EBI ENST00000577936.2 ENSP00000462159.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000577936.2Link to Ensembl Protein Viewer:ENSP00000462159.2Re-query CCDS DB by Nucleotide ID:ENST00000577936Re-query CCDS DB by Protein ID:ENSP00000462159
Original member Current member EBI ENST00000579795.6 ENSP00000464645.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000579795.6Link to Ensembl Protein Viewer:ENSP00000464645.1Re-query CCDS DB by Nucleotide ID:ENST00000579795Re-query CCDS DB by Protein ID:ENSP00000464645
Original member Current member NCBI NM_001369369.1 NP_001356298.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001369369.1Link to Protein Sequence:NP_001356298.1Re-query CCDS DB by Nucleotide ID:NM_001369369Re-query CCDS DB by Protein ID:NP_001356298Link to BLAST:NP_001356298.1
Original member Current member NCBI NM_003593.3 NP_003584.2 Accepted alive Link to Nucleotide Sequence:NM_003593.3Link to Protein Sequence:NP_003584.2Re-query CCDS DB by Nucleotide ID:NM_003593Re-query CCDS DB by Protein ID:NP_003584Link to BLAST:NP_003584.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356298.1 648 O15353 648 100% 0 0
NP_003584.2 648 O15353 648 100% 0 0

Chromosomal Locations for CCDS 11232.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28523970 28524092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28524503 28524967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28527251 28527361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28529094 28529224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28530749 28530845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28534331 28534538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28534707 28535198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28537117 28537436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGGTGTCGCTACCCCCGCCGCAGTCTGACGTCACGCTGCCGGGCCCCACCAGACTGGAGGGCGAGCGCC
AAGGGGACCTCATGCAGGCACCGGGCCTCCCAGGCTCCCCTGCCCCACAGAGTAAGCATGCCGGCTTCAG
CTGCTCGTCATTTGTGTCCGACGGCCCTCCAGAGAGGACACCCTCACTGCCCCCACACAGCCCCCGCATT
GCGTCACCAGGGCCCGAGCAAGTCCAGGGCCACTGCCCAGCCGGCCCCGGCCCTGGGCCCTTCAGGCTCT
CACCCTCAGACAAGTATCCTGGCTTTGGCTTTGAGGAGGCCGCAGCAAGCAGCCCTGGGCGATTCCTCAA
GGGCAGCCACGCGCCCTTCCACCCGTACAAGCGGCCTTTCCATGAGGACGTCTTCCCAGAGGCCGAGACC
ACCCTGGCCCTCAAAGGACACTCCTTTAAGACCCCAGGGCCGCTGGAGGCCTTCGAGGAGATCCCAGTGG
ACGTGGCGGAGGCCGAGGCCTTCCTGCCTGGCTTCTCAGCAGAGGCCTGGTGTAACGGGCTCCCCTACCC
CAGCCAGGAGCATGGCCCCCAAGTCCTGGGTTCAGAGGTCAAAGTCAAGCCCCCAGTTCTGGAGAGTGGT
GCTGGGATGTTCTGCTACCAGCCTCCCTTGCAGCATATGTACTGCTCCTCCCAGCCCCCCTTCCACCAGT
ACTCGCCAGGTGGTGGCAGCTACCCCATACCCTACCTGGGCTCCTCACACTATCAGTACCAGCGAATGGC
ACCCCAGGCCAGCACCGATGGGCACCAGCCTCTCTTCCCAAAACCCATCTATTCCTACAGCATCCTCATC
TTCATGGCCCTTAAGAACAGTAAAACTGGGAGCCTTCCCGTCAGCGAGATCTACAATTTTATGACGGAGC
ACTTTCCTTACTTCAAGACAGCACCCGATGGCTGGAAGAATTCTGTCCGGCACAACCTATCCCTCAACAA
GTGCTTCGAGAAGGTGGAGAACAAATCAGGAAGTTCCTCCCGCAAGGGCTGCCTGTGGGCCCTCAATCCG
GCCAAGATCGACAAGATGCAAGAGGAGCTGCAAAAATGGAAGAGGAAAGATCCCATTGCTGTGCGCAAAA
GCATGGCCAAGCCAGAAGAGCTGGACAGCCTCATTGGAGACAAGAGAGAAAAGCTGGGCTCCCCACTCCT
GGGCTGTCCGCCCCCTGGGCTGTCCGGCTCAGGCCCCATCCGGCCCCTGGCACCCCCAGCTGGCCTCTCC
CCACCACTGCACTCACTCCACCCAGCTCCAGGCCCCATTCCTGGCAAGAACCCCCTGCAGGACCTACTTA
TGGGGCACACACCCTCCTGCTATGGGCAGACATACTTGCACCTCTCACCAGGCCTGGCCCCTCCTGGACC
CCCGCAGCCATTGTTCCCACAGCCGGACGGGCACCTTGAGCTGCGGGCCCAGCCAGGCACCCCCCAGGAC
TCGCCTCTGCCTGCCCACACCCCACCCAGCCACAGTGCCAAGCTACTGGCCGAGCCTTCCCCAGCCAGGA
CTATGCACGACACCCTGCTGCCAGATGGAGACCTTGGCACTGACCTGGATGCCATCAATCCCTCACTCAC
TGACTTCGACTTCCAGGGAAACCTGTGGGAACAGTTGAAGGATGATAGCTTGGCCCTCGACCCCCTGGTA
CTGGTGACCTCATCCCCGACATCATCTTCGATGCCACCACCCCAGCCACCACCTCACTGCTTCCCCCCTG
GGCCCTGTCTGACAGAGACAGGCAGTGGGGCAGGTGACTTGGCAGCCCCGGGCAGTGGTGGCTCCGGGGC
ACTGGGTGACCTGCACCTCACCACCCTCTACTCTGCCTTTATGGAGCTGGAGCCCACGCCCCCCACGGCC
CCTGCAGGCCCCTCTGTGTACCTCAGCCCCAGCTCCAAGCCCGTGGCCCTGGCATGA

Translation (648 aa):
MVSLPPPQSDVTLPGPTRLEGERQGDLMQAPGLPGSPAPQSKHAGFSCSSFVSDGPPERTPSLPPHSPRI
ASPGPEQVQGHCPAGPGPGPFRLSPSDKYPGFGFEEAAASSPGRFLKGSHAPFHPYKRPFHEDVFPEAET
TLALKGHSFKTPGPLEAFEEIPVDVAEAEAFLPGFSAEAWCNGLPYPSQEHGPQVLGSEVKVKPPVLESG
AGMFCYQPPLQHMYCSSQPPFHQYSPGGGSYPIPYLGSSHYQYQRMAPQASTDGHQPLFPKPIYSYSILI
FMALKNSKTGSLPVSEIYNFMTEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVENKSGSSSRKGCLWALNP
AKIDKMQEELQKWKRKDPIAVRKSMAKPEELDSLIGDKREKLGSPLLGCPPPGLSGSGPIRPLAPPAGLS
PPLHSLHPAPGPIPGKNPLQDLLMGHTPSCYGQTYLHLSPGLAPPGPPQPLFPQPDGHLELRAQPGTPQD
SPLPAHTPPSHSAKLLAEPSPARTMHDTLLPDGDLGTDLDAINPSLTDFDFQGNLWEQLKDDSLALDPLV
LVTSSPTSSSMPPPQPPPHCFPPGPCLTETGSGAGDLAAPGSGGSGALGDLHLTTLYSAFMELEPTPPTA
PAGPSVYLSPSSKPVALA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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