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Report for CCDS11086.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11086.2 Public Homo sapiens 17 SLC16A11 24 110 108 CCDS HistoryNCBI Gene:162515Re-query CCDS DB by CCDS ID:11086.2Re-query CCDS DB by GeneID:162515See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 11086.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 11086.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000574600.3 ENSP00000460927.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000574600.3Link to Ensembl Protein Viewer:ENSP00000460927.2Re-query CCDS DB by Nucleotide ID:ENST00000574600Re-query CCDS DB by Protein ID:ENSP00000460927
Original member Current member EBI ENST00000662352.3 ENSP00000499634.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000662352.3Link to Ensembl Protein Viewer:ENSP00000499634.1Re-query CCDS DB by Nucleotide ID:ENST00000662352Re-query CCDS DB by Protein ID:ENSP00000499634
Original member Current member NCBI NM_001370549.1 NP_001357478.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001370549.1Link to Protein Sequence:NP_001357478.1Re-query CCDS DB by Nucleotide ID:NM_001370549Re-query CCDS DB by Protein ID:NP_001357478Link to BLAST:NP_001357478.1
Original member Current member NCBI NM_153357.3 NP_699188.2 Accepted alive Link to Nucleotide Sequence:NM_153357.3Link to Protein Sequence:NP_699188.2Re-query CCDS DB by Nucleotide ID:NM_153357Re-query CCDS DB by Protein ID:NP_699188Link to BLAST:NP_699188.2

Chromosomal Locations for CCDS 11086.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 7041679 7041908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7041996 7042763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7042930 7043073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7043312 7043513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGACCCCCCAGCCCGCCGGACCCCCGGATGGGGGCTGGGGCTGGGTGGTGGCGGCCGCAGCCTTCGCGA
TAAACGGGCTGTCCTACGGGCTGCTGCGCTCGCTGGGCCTTGCCTTCCCTGACCTTGCCGAGCACTTTGA
CCGAAGCGCCCAGGACACTGCGTGGATCAGCGCCCTGGCCCTGGCCGTGCAGCAGGCAGCCAGCCCCGTG
GGCAGCGCCCTGAGCACGCGCTGGGGGGCCCGCCCCGTGGTGATGGTTGGGGGCGTCCTCGCCTCGCTGG
GCTTCGTCTTCTCGGCTTTCGCCAGCGATCTGCTGCATCTCTACCTCGGCCTGGGCCTCCTCGCTGGCTT
TGGTTGGGCCCTGGTGTTCGCCCCCGCCCTAGGCACCCTCTCGCGTTACTTCTCCCGCCGTCGAGTCTTG
GCGGTGGGGCTGGCGCTCACCGGCAACGGGGCCTCCTCGCTGCTCCTGGCGCCCGCCTTGCAGCTTCTTC
TCGATACTTTCGGCTGGCGGGGCGCTCTGCTCCTCCTCGGCGCGATCACCCTCCACCTCACCCCCTGTGG
CGCCCTGCTGCTACCCCTGGTCCTTCCTGGAGACCCCCCAGCCCCACCGCGTAGTCCCCTAGCTGCCCTC
GGCCTGAGTCTGTTCACACGCCGGGCCTTCTCAATCTTTGCTCTAGGCACAGCCCTGGTTGGGGGCGGGT
ACTTCGTTCCTTACGTGCACTTGGCTCCCCACGCTTTAGACCGGGGCCTGGGGGGATACGGAGCAGCGCT
GGTGGTGGCCGTGGCTGCGATGGGGGATGCGGGCGCCCGGCTGGTCTGCGGGTGGCTGGCAGACCAAGGC
TGGGTGCCCCTCCCGCGGCTGCTGGCCGTATTCGGGGCTCTGACTGGGCTGGGGCTGTGGGTGGTGGGGC
TGGTGCCCGTGGTGGGCGGCGAAGAGAGCTGGGGGGGTCCCCTGCTGGCCGCGGCTGTGGCCTATGGGCT
GAGCGCGGGGAGTTACGCCCCGCTGGTTTTCGGTGTACTCCCCGGGCTGGTGGGCGTCGGAGGTGTGGTG
CAGGCCACAGGGCTGGTGATGATGCTGATGAGCCTCGGGGGGCTCCTGGGCCCTCCCCTGTCAGGCTTCC
TAAGGGATGAGACAGGAGACTTCACCGCCTCTTTCCTCCTGTCTGGTTCTTTGATCCTCTCCGGCAGCTT
CATCTACATAGGGTTGCCCAGGGCGCTGCCCTCCTGTGGTCCAGCCTCCCCTCCAGCCACGCCTCCCCCA
GAGACGGGGGAGCTGCTTCCCGCTCCCCAGGCAGTCTTGCTGTCCCCAGGAGGCCCTGGCTCCACTCTGG
ACACCACTTGTTGA

Translation (447 aa):
MTPQPAGPPDGGWGWVVAAAAFAINGLSYGLLRSLGLAFPDLAEHFDRSAQDTAWISALALAVQQAASPV
GSALSTRWGARPVVMVGGVLASLGFVFSAFASDLLHLYLGLGLLAGFGWALVFAPALGTLSRYFSRRRVL
AVGLALTGNGASSLLLAPALQLLLDTFGWRGALLLLGAITLHLTPCGALLLPLVLPGDPPAPPRSPLAAL
GLSLFTRRAFSIFALGTALVGGGYFVPYVHLAPHALDRGLGGYGAALVVAVAAMGDAGARLVCGWLADQG
WVPLPRLLAVFGALTGLGLWVVGLVPVVGGEESWGGPLLAAAVAYGLSAGSYAPLVFGVLPGLVGVGGVV
QATGLVMMLMSLGGLLGPPLSGFLRDETGDFTASFLLSGSLILSGSFIYIGLPRALPSCGPASPPATPPP
ETGELLPAPQAVLLSPGGPGSTLDTTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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