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Report for CCDS11018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11018.1 Public Homo sapiens 17 MNT 24 110 108 CCDS HistoryNCBI Gene:4335Re-query CCDS DB by CCDS ID:11018.1Re-query CCDS DB by GeneID:4335See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11018.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000174618.5 ENSP00000174618.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000174618.5Link to Ensembl Protein Viewer:ENSP00000174618.4Re-query CCDS DB by Nucleotide ID:ENST00000174618Re-query CCDS DB by Protein ID:ENSP00000174618
Original member Current member NCBI NM_020310.3 NP_064706.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020310.3Link to Protein Sequence:NP_064706.1Re-query CCDS DB by Nucleotide ID:NM_020310Re-query CCDS DB by Protein ID:NP_064706Link to BLAST:NP_064706.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064706.1 582 Q99583 582 100% 0 0

Chromosomal Locations for CCDS 11018.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 2386901 2387649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2387857 2388049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2394043 2394154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2394305 2394346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2394875 2395454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2400640 2400712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1749 nt):
ATGAGCATAGAGACGCTACTGGAGGCGGCCCGCTTCCTGGAATGGCAAGCGCAGCAACAACAGAGAGCAC
GTGAGGAGCAGGAGCGGCTTCGCTTGGAGCAGGAGCGAGAGCAGGAACAGAAGAAGGCCAATAGCCTGGC
CAGGCTGGCACATACCCTTCCTGTGGAGGAACCCCGCATGGAGGCGCCACCCCTGCCTCTGTCTCCACCG
GCTCCCCCGCCGGCACCCCCACCACCACTTGCCACCCCTGCCCCACTGACTGTCATCCCTATCCCTGTGG
TGACCAACTCCCCTCAGCCTCTACCCCCACCCCCACCCTTGCCCGCGGCAGCCCAGCCTCTGCCCCTGGC
GCCTCGTCAGCCGGCCCTGGTTGGCGCCCCCGGACTCAGCATTAAGGAGCCTGCCCCCCTGCCCAGCAGG
CCGCAGGTGCCCACCCCTGCTCCCCTACTGCCGGACTCGAAGGCCACCATTCCACCCAATGGCAGCCCCA
AGCCTTTGCAGCCCCTCCCCACGCCTGTCCTGACCATAGCGCCACACCCTGGAGTCCAGCCTCAGCTGGC
CCCCCAGCAGCCGCCCCCACCCACGCTGGGGACCCTGAAGTTGGCACCAGCTGAAGAAGTCAAATCCAGT
GAACAGAAGAAGAGGCCCGGGGGGATCGGAACCAGAGAAGTCCACAACAAATTGGAGAAGAACAGGAGGG
CCCATCTGAAAGAGTGCTTTGAGACCCTGAAGCGGAACATCCCCAACGTGGATGACAAGAAGACGTCCAA
TCTGAGCGTGCTGCGGACGGCGCTGCGGTACATCCAGTCCCTGAAGAGGAAGGAGAAGGAATATGAGCAT
GAAATGGAGCGGCTGGCACGTGAGAAGATTGCCACGCAGCAGCGGCTGGCAGAGCTCAAGCACGAGCTGA
GCCAGTGGATGGACGTACTGGAGATTGACCGCGTGCTGCGGCAGACGGGCCAGCCCGAGGATGACCAGGC
CTCCACCTCCACCGCCTCTGAGGGTGAGGACAACATAGACGAGGATATGGAGGAGGACCGGGCGGGCCTG
GGCCCACCTAAGCTGAGCCATCGTCCCCAGCCGGAGCTGCTGAAGTCCACCCTGCCACCCCCCAGCACCA
CCCCTGCGCCTCTGCCTCCACACCCACACCCTCACCCCCACTCCGTGGCCCTACCTCCTGCCCACCTCCC
CGTGCAGCAGCAGCAGCCACAGCAGAAGACCCCTCTGCCAGCCCCTCCTCCCCCACCGGCTGCCCCTGCC
CAGACACTGGTGCCAGCTCCAGCCCATCTGGTGGCGACGGCTGGGGGTGGCTCCACGGTCATCGCCCACA
CAGCCACCACTCACGCTTCAGTCATCCAGACTGTGAACCACGTTCTGCAGGGGCCAGGCGGCAAGCACAT
CGCCCACATCGCCCCCTCGGCCCCCAGCCCTGCGGTGCAACTGGCGCCTGCCACACCCCCCATTGGGCAC
ATCACTGTGCACCCTGCCACCCTCAACCATGTGGCCCACCTGGGCTCCCAGCTGCCCTTGTACCCGCAGC
CCGTGGCAGTGAGCCACATCGCCCACACCCTCTCGCACCAGCAAGTCAACGGCACGGCCGGCCTGGGGCC
CCCGGCTACTGTCATGGCAAAGCCGGCCGTGGGGGCTCAGGTGGTGCACCACCCCCAGCTGGTGGGCCAG
ACCGTGCTCAACCCTGTGACCATGGTCACCATGCCCTCCTTCCCAGTCAGCACACTCAAGCTGGCTTGA

Translation (582 aa):
MSIETLLEAARFLEWQAQQQQRAREEQERLRLEQEREQEQKKANSLARLAHTLPVEEPRMEAPPLPLSPP
APPPAPPPPLATPAPLTVIPIPVVTNSPQPLPPPPPLPAAAQPLPLAPRQPALVGAPGLSIKEPAPLPSR
PQVPTPAPLLPDSKATIPPNGSPKPLQPLPTPVLTIAPHPGVQPQLAPQQPPPPTLGTLKLAPAEEVKSS
EQKKRPGGIGTREVHNKLEKNRRAHLKECFETLKRNIPNVDDKKTSNLSVLRTALRYIQSLKRKEKEYEH
EMERLAREKIATQQRLAELKHELSQWMDVLEIDRVLRQTGQPEDDQASTSTASEGEDNIDEDMEEDRAGL
GPPKLSHRPQPELLKSTLPPPSTTPAPLPPHPHPHPHSVALPPAHLPVQQQQPQQKTPLPAPPPPPAAPA
QTLVPAPAHLVATAGGGSTVIAHTATTHASVIQTVNHVLQGPGGKHIAHIAPSAPSPAVQLAPATPPIGH
ITVHPATLNHVAHLGSQLPLYPQPVAVSHIAHTLSHQQVNGTAGLGPPATVMAKPAVGAQVVHHPQLVGQ
TVLNPVTMVTMPSFPVSTLKLA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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