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Report for CCDS10602.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10602.2 Public Homo sapiens 16 PDZD9 24 110 108 CCDS HistoryNCBI Gene:255762Re-query CCDS DB by CCDS ID:10602.2Re-query CCDS DB by GeneID:255762See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 10602.1
The coding region has been updated to represent an alternative splice pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10602.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000537222.6 ENSP00000441685.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537222.6Link to Ensembl Protein Viewer:ENSP00000441685.2Re-query CCDS DB by Nucleotide ID:ENST00000537222Re-query CCDS DB by Protein ID:ENSP00000441685
Original member Current member NCBI NM_173806.4 NP_776167.2 Accepted alive Link to Nucleotide Sequence:NM_173806.4Link to Protein Sequence:NP_776167.2Re-query CCDS DB by Nucleotide ID:NM_173806Re-query CCDS DB by Protein ID:NP_776167Link to BLAST:NP_776167.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776167.2 204 Q8IXQ8-3 204 100% 0 0

Chromosomal Locations for CCDS 10602.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 21984267 21984660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21988602 21988791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22001017 22001047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGCAGAAGGCCTCCCACAAAAACAAAAAAGGTGATGTTCTGATTAGTGTTGGCCATGCCAATGTGTTAG
GATATACTCTTCGAGAATTTTTACAGCTTTTGCAACATATCACTATTGGAACAGTGCTACAAATCAAGGT
TTACCGAGATTTTATTAACATTCCTGAAGAATGGCAAGAAATATATGATTTAATCCCTGAGGCCAAATTC
CCAGTAACAAGCACACCAAAGAAAATTGAGCTGGCAAAAGATGAATCTTTCACAAGCAGTGATGATAATG
AAAATGTAGATTTAGATAAAAGACTTCAATATTATAGATATCCGTGGTCAACTGTGCATCACCCTGCAAG
GAGACCAATATCCATCTCCAGAGACTGGCATGGATATAAGAAGAAGAACCATACTATTAGTGTAGGAAAA
GACATTAATTGTGACGTGATGATTCACAGAGACGACAAGAAAGAAGTGAGGGCCCCTTCTCCATACTGGA
TAATGGTGAAGCAAGACAATGAAAGCTCTTCCTCCTCTACCTCCTCTACCTCAGATGCATTTTGGCTGGA
AGATTGTGCCCAAGTTGAAGAGGGTAAAGCCCAACTGGTATCAAAGGTTGGTTAG

Translation (204 aa):
MQKASHKNKKGDVLISVGHANVLGYTLREFLQLLQHITIGTVLQIKVYRDFINIPEEWQEIYDLIPEAKF
PVTSTPKKIELAKDESFTSSDDNENVDLDKRLQYYRYPWSTVHHPARRPISISRDWHGYKKKNHTISVGK
DINCDVMIHRDDKKEVRAPSPYWIMVKQDNESSSSSTSSTSDAFWLEDCAQVEEGKAQLVSKVG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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