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Report for CCDS1038.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1038.1 Public Homo sapiens 1 S100A8 24 110 108 CCDS HistoryNCBI Gene:6279Re-query CCDS DB by CCDS ID:1038.1Re-query CCDS DB by GeneID:6279See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1038.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368732.5 ENSP00000357721.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368732.5Link to Ensembl Protein Viewer:ENSP00000357721.1Re-query CCDS DB by Nucleotide ID:ENST00000368732Re-query CCDS DB by Protein ID:ENSP00000357721
Original member Current member EBI ENST00000368733.4 ENSP00000357722.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368733.4Link to Ensembl Protein Viewer:ENSP00000357722.3Re-query CCDS DB by Nucleotide ID:ENST00000368733Re-query CCDS DB by Protein ID:ENSP00000357722
Original member Current member NCBI NM_001319201.2 NP_001306130.1 Accepted alive Link to Nucleotide Sequence:NM_001319201.2Link to Protein Sequence:NP_001306130.1Re-query CCDS DB by Nucleotide ID:NM_001319201Re-query CCDS DB by Protein ID:NP_001306130Link to BLAST:NP_001306130.1
Original member Current member NCBI NM_002964.5 NP_002955.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002964.5Link to Protein Sequence:NP_002955.2Re-query CCDS DB by Nucleotide ID:NM_002964Re-query CCDS DB by Protein ID:NP_002955Link to BLAST:NP_002955.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001306130.1 93 P05109 93 100% 0 0
NP_002955.2 93 P05109 93 100% 0 0

Chromosomal Locations for CCDS 1038.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 153390103 153390243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153390395 153390535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (282 nt):
ATGTTGACCGAGCTGGAGAAAGCCTTGAACTCTATCATCGACGTCTACCACAAGTACTCCCTGATAAAGG
GGAATTTCCATGCCGTCTACAGGGATGACCTGAAGAAATTGCTAGAGACCGAGTGTCCTCAGTATATCAG
GAAAAAGGGTGCAGACGTCTGGTTCAAAGAGTTGGATATCAACACTGATGGTGCAGTTAACTTCCAGGAG
TTCCTCATTCTGGTGATAAAGATGGGCGTGGCAGCCCACAAAAAAAGCCATGAAGAAAGCCACAAAGAGT
AG

Translation (93 aa):
MLTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETECPQYIRKKGADVWFKELDINTDGAVNFQE
FLILVIKMGVAAHKKSHEESHKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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