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Report for CCDS9459.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9459.1 Public Homo sapiens 13 SCEL 24 110 108 CCDS HistoryNCBI Gene:8796Re-query CCDS DB by CCDS ID:9459.1Re-query CCDS DB by GeneID:8796See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9459.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000349847.4 ENSP00000302579.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000349847.4Link to Ensembl Protein Viewer:ENSP00000302579.5Re-query CCDS DB by Nucleotide ID:ENST00000349847Re-query CCDS DB by Protein ID:ENSP00000302579
Original member Current member NCBI NM_144777.3 NP_659001.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144777.3Link to Protein Sequence:NP_659001.2Re-query CCDS DB by Nucleotide ID:NM_144777Re-query CCDS DB by Protein ID:NP_659001Link to BLAST:NP_659001.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659001.2 688 O95171-1 688 100% 0 0

Chromosomal Locations for CCDS 9459.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 77555876 77555918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77556596 77556713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77559804 77559863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77563831 77563899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77567680 77567748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77568295 77568333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77569371 77569451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77572124 77572189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77589144 77589224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77591395 77591460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77593514 77593573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77597545 77597589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77599329 77599388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77599689 77599748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77602065 77602124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77602654 77602713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77603076 77603135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77604356 77604415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77608056 77608115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77609058 77609117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77610047 77610106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77612891 77612941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77613893 77613955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77617599 77617658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77617803 77617862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77618004 77618060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77627947 77628009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77634379 77634450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77637120 77637194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77640676 77640784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77642706 77642808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77644258 77644274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2067 nt):
ATGTCCAATGTTACCTTGAGAAAAATGTCTCCCACAGGAAATGAGATGAAGAGCACCACTCAGGGAACCA
CACGGAAGCAGCAGGATTTTCACGAGGTGAACAAAAGAAGAACTTTCTTACAGGATAACAGTTGGATAAA
GAAACGCCCTGAAGAAGAAAAAGATGAAAATTACGGTAGGGTGGTGCTCAACCGACATAATTCCCATGAT
GCATTGGACAGGAAAGTAAATGAGAGAGATGTGCCAAAAGCTACAATTAGTCGGTACAGTTCTGATGACA
CTTTGGACAGGATCTCAGACAGAAATGATGCTGCTAAAACATATAAGGCCAATACCTTGGATAACCAACT
AACCAATAGGAGCATGTCCATGTTTAGATCACTGGAAGTAACAAAGTTGCAACCTGGCGGTTCATTGAAT
GCCAACACCTCCAACACCATAGCATCCACTTCTGCTACTACTCCTGTAAAGAAGAAGAGGCAGTCCTGGT
TTCCACCGCCCCCTCCAGGTTACAATGCCTCCTCGAGCACAGGAACCAGGAGACGGGAACCAGGTGTTCA
CCCTCCAATACCTCCAAAGCCCAGTTCTCCTGTTTCTTCTCCTAACCAGCTGAGACAGGATAATAGGCAG
ATACATCCACCTAAACCAGGTGTATATACAGAAACCAACAGATCTGCTGAAAGAAATATAAGGAGTCAGG
ATCTTGATAACATCGTCAAAGTGGCCACTTCACTTCAGAGAAGTGACAAAGGTGAAGAATTGGATAATCT
CATCAAAATGAACAAAAGCTTGAATAGGAATCAAGGTCTTGATAGTCTCTTCAGAGCAAATCCAAAGGTA
GAAGAAAGAGAGAAAAGAGCCAAAAGCCTTGAAAGTCTCATCTATATGAGTACCCGGACAGATAAAGATG
GCAAAGGAATCCAAAGCCTTGGAAGTCCGATTAAAGTTAATCAAAGGACTGACAAAAATGAGAAAGGAAG
ACAAAATCTCGAATCTGTTGCTAAAGTGAATGCCAGGATGAATAAAACGAGCAGAAGAAGTGAAGACCTT
GATAATGCTACTGAAGTAAATCCCAAAGGACATGAAAATACCACTGGAAAAAAAGACCTTGATGGGCTTA
TTAAAGTGGATCCTGAAACAAATAAAAATATTACGAGGGGCCAGAGCCTTGATAATCTCATCAAAGTGAC
CCCTGAAGTAAAGAGAAGTAACCAAGGTTCCAAAGACCTTAATAACTTCATCAAAGTGTATCCAGGAACA
GAAAAAAGTACTGAAGGGGGCCAAAGTCTCGACAGCCTCATTAAAGTGACTCCTGAAAGAAACAGAACTA
ACCAAGGGAACCAAGACTTGGAAAATCTTATCAAAGTGATCCCTTCAGCAAACAAAAGCAGTGAACAAGG
TCTTGATGAACATATTAATGTCAGCCCCAAAGCTGTCAAAAACACTGATGGAAAACAAGATCTTGATAAA
CTCATCAAGGTGAATCCTGAAATTTTCACAAACAACCAAAGAAACCAAGATCTTGCTAACCTCATCAAAG
TAAATCCTGCAGTAATCAGAAACAATCAGAGCCAAGACTTGGACAATCTTATTAAAGTGAAACCTTCAGC
TCTTAGAAACACTAATCGAGACCAGAACCTGGAAAATTTAATTGAAGTAAATTCTCATGTGTCTGAAAAC
AAGAATGGAAGCTCTAACACTGGAGCCAAGCAGGCAGGACCACAGGATACTGTTGTGTACACAAGGACAT
ATGTGGAGAATAGTAAATCACCCAAGGATGGATATCAGGAGAATATCTCTGGAAAATACATACAAACTGT
TTATTCAACTTCTGATAGGTCTGTCATTGAAAGAGATATGTGCACTTACTGCCGAAAACCCTTGGGTGTA
GAAACTAAAATGATTTTAGATGAATTACAAATTTGCTGCCATTCTACTTGCTTTAAGTGTGAAATATGCA
AGCAGCCTTTGGAAAATCTACAAGCGGGTGATAGTATTTGGATTTATAGACAGACAATACACTGTGAACC
TTGCTACTCTAAAATTATGGCAAAGTGGATTCCATAA

Translation (688 aa):
MSNVTLRKMSPTGNEMKSTTQGTTRKQQDFHEVNKRRTFLQDNSWIKKRPEEEKDENYGRVVLNRHNSHD
ALDRKVNERDVPKATISRYSSDDTLDRISDRNDAAKTYKANTLDNQLTNRSMSMFRSLEVTKLQPGGSLN
ANTSNTIASTSATTPVKKKRQSWFPPPPPGYNASSSTGTRRREPGVHPPIPPKPSSPVSSPNQLRQDNRQ
IHPPKPGVYTETNRSAERNIRSQDLDNIVKVATSLQRSDKGEELDNLIKMNKSLNRNQGLDSLFRANPKV
EEREKRAKSLESLIYMSTRTDKDGKGIQSLGSPIKVNQRTDKNEKGRQNLESVAKVNARMNKTSRRSEDL
DNATEVNPKGHENTTGKKDLDGLIKVDPETNKNITRGQSLDNLIKVTPEVKRSNQGSKDLNNFIKVYPGT
EKSTEGGQSLDSLIKVTPERNRTNQGNQDLENLIKVIPSANKSSEQGLDEHINVSPKAVKNTDGKQDLDK
LIKVNPEIFTNNQRNQDLANLIKVNPAVIRNNQSQDLDNLIKVKPSALRNTNRDQNLENLIEVNSHVSEN
KNGSSNTGAKQAGPQDTVVYTRTYVENSKSPKDGYQENISGKYIQTVYSTSDRSVIERDMCTYCRKPLGV
ETKMILDELQICCHSTCFKCEICKQPLENLQAGDSIWIYRQTIHCEPCYSKIMAKWIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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