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Report for CCDS94025.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94025.1 Public Homo sapiens 6 SYNJ2 24 110 108 CCDS HistoryNCBI Gene:8871Re-query CCDS DB by CCDS ID:94025.1Re-query CCDS DB by GeneID:8871See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94025.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000640338.1 ENSP00000492532.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000640338.1Link to Ensembl Protein Viewer:ENSP00000492532.1Re-query CCDS DB by Nucleotide ID:ENST00000640338Re-query CCDS DB by Protein ID:ENSP00000492532
Current member NCBI NM_001410947.1 NP_001397876.1 Accepted alive Link to Nucleotide Sequence:NM_001410947.1Link to Protein Sequence:NP_001397876.1Re-query CCDS DB by Nucleotide ID:NM_001410947Re-query CCDS DB by Protein ID:NP_001397876Link to BLAST:NP_001397876.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001397876.1 1288 O15056-3 1288 100% 0 0

Chromosomal Locations for CCDS 94025.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 157981962 157982088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158017204 158017290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158028756 158029026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158033455 158033680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158043316 158043399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158054967 158055028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158059257 158059353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158061992 158062164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158063791 158063872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158064601 158064750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158064826 158064991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158066444 158066635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158068647 158068728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158069533 158069673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158071602 158071794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158074580 158074738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158076626 158076782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158078164 158078281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158081109 158081327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158081432 158081510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158083429 158083597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158084001 158084174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158086855 158086989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158088660 158088772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158089839 158089947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158092926 158093104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158093888 158094010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3867 nt):
ATGGCCCTGAGCAAAGGGCTGCGGCTGCTGGGGCGCCTGGGGGCCGAGGGGGACTGTAGCGTGCTGCTGG
AGGCGCGCGGCCGCGACGACTGCCTGCTGTTCGAGGCCGGCACGGTGGCCACGCTGGCTCCAGAAGAAAA
GGAAGTCATTAAAGGACAGTATGGCAAGCTCACGGACGCGTACGGCTGCCTGGGGGAGCTGAGGCTGAAA
TCTGGTGGCACGTCTCTGAGCTTCCTGGTGTTGGTGACAGGCTGCACATCTGTGGGCAGAATTCCAGATG
CTGAAATCTACAAAATCACTGCCACTGACTTTTACCCTCTTCAGGAAGAGGCCAAGGAGGAGGAACGCCT
CATAGCTTTGAAGAAAATCCTCAGCTCGGGGGTGTTCTATTTCTCATGGCCAAACGATGGGTCTCGCTTT
GACCTGACTGTCCGCACGCAGAAGCAGGGGGATGACAGCTCTGAATGGGGGAACTCCTTCTTCTGGAACC
AGCTGTTGCACGTGCCCTTGAGGCAGCACCAGGTGAGCTGCTGTGACTGGCTGCTGAAGATCATCTGCGG
GGTGGTCACCATCCGCACCGTGTATGCCTCCCACAAGCAGGCCAAGGCCTGCCTCGTCTCTCGCGTTAGC
TGTGAGCGCACAGGCACTCGCTTCCACACCCGTGGCGTGAACGACGACGGCCATGTGTCCAACTTCGTGG
AGACAGAGCAGATGATTTACATGGACGATGGAGTGTCATCTTTTGTCCAGATCAGAGGCTCCGTTCCGCT
GTTCTGGGAACAGCCAGGGCTTCAGGTTGGCTCCCATCATCTGAGACTCCACAGAGGCCTGGAAGCCAAT
GCCCCTGCTTTCGACAGGCACATGGTGCTTCTGAAGGAGCAGTACGGGCAGCAGGTGGTCGTGAACCTTC
TGGGAAGCAGAGGCGGAGAGGAGGTGCTCAACAGAGCCTTCAAGAAGCTGCTCTGGGCTTCTTGCCACGC
GGGCGACACGCCTATGATCAATTTTGACTTCCATCAGTTTGCCAAAGGTGGGAAGCTAGAGAAATTGGAG
ACCCTCTTGAGGCCACAGTTAAAGCTGCACTGGGAAGACTTCGATGTGTTCACAAAGGGGGAGAACGTCA
GTCCACGTTTTCAGAAAGGCACTTTGCGGATGAACTGTCTTGACTGCCTGGACCGAACCAACACTGTGCA
GAGCTTCATCGCGCTCGAGGTCCTGCATCTGCAGCTCAAGACCCTGGGGCTGAGTTCAAAACCCATCGTT
GACCGCTTTGTGGAGTCCTTCAAAGCCATGTGGTCTCTGAATGGCCACAGCCTGAGCAAGGTGTTCACAG
GCAGCAGAGCCCTGGAAGGGAAGGCCAAGGTGGGGAAGCTGAAGGATGGAGCCCGGTCCATGTCTCGAAC
CATCCAGTCCAACTTCTTCGACGGGGTGAAGCAGGAGGCCATCAAGCTGCTGCTGGTTGGGGACGTCTAC
GGCGAGGAGGTGGCAGACAAAGGGGGCATGCTGCTGGACAGCACGGCGCTCCTGGTGACTCCCAGGATCC
TGAAAGCTATGACTGAGCGTCAGTCCGAATTCACAAATTTCAAGCGGATCCGGATTGCTATGGGGACCTG
GAACGTGAACGGAGGAAAGCAGTTCCGGAGCAACGTGCTCAGGACGGCGGAGCTGACAGACTGGCTGCTC
GACTCGCCCCAGCTCTCGGGAGCTACCGACTCCCAGGATGACAGCAGCCCAGCTGACATATTTGCTGTGG
GGTTTGAAGAGATGGTGGAATTGAGCGCAGGGAATATTGTCAATGCCAGTACTACCAACAAGAAGATGTG
GGGTGAACAGCTTCAGAAAGCCATCTCACGCTCTCATAGATACATTCTGTTGACTTCGGCACAGCTGGTG
GGCGTCTGTCTTTATATCTTTGTACGTCCATACCATGTCCCGTTCATCAGGGACGTAGCCATCGACACAG
TGAAGACGGGCATGGGGGGCAAGGCGGGGAACAAGGGCGCCGTCGGCATCCGCTTCCAGTTCCACAGCAC
CAGCTTCTGCTTCATATGTAGTCACCTGACGGCCGGGCAGTCCCAGGTGAAGGAGCGGAATGAAGACTAC
AAGGAGATCACCCAGAAACTCTGCTTCCCAATGGGGAGAAATGTTTTTTCTCATGATTATGTATTTTGGT
GTGGCGATTTCAACTACCGCATTGATCTTACTTATGAAGAAGTCTTCTATTTTGTTAAACGCCAAGACTG
GAAGAAACTTCTGGAATTTGATCAACTACAGCTACAGAAATCAAGTGGAAAAATTTTTAAGGACTTTCAC
GAAGGAGCCATTAACTTTGGACCCACCTACAAGTATGACGTTGGCTCAGCCGCCTACGATACAAGCGACA
AATGCCGCACCCCCGCCTGGACAGACAGGGTGCTGTGGTGGAGGAAGAAACATCCCTTTGATAAAACAGC
TGGAGAACTCAACCTTCTAGACAGTGATCTAGATGTTGACACCAAAGTCAGACACACCTGGTCTCCTGGT
GCCCTGCAGTATTATGGTCGTGCGGAGCTACAAGCGTCTGATCACAGACCTGTGCTGGCGATCGTGGAGG
TGGAAGTTCAGGAAGTCGATGTGGGTGCTCGGGAGAGGGTTTTCCAGGAAGTGTCCTCCTTCCAGGGCCC
CCTGGATGCCACTGTTGTAGTAAACCTTCAATCACCGACCTTAGAAGAGAAAAACGAGTTTCCAGAGGAC
CTGCGTACTGAGCTCATGCAGACCTTGGGGAGTTATGGGACAATTGTTCTTGTCAGGATCAACCAAGGGC
AGATGCTGGTAACTTTTGCAGACAGTCACTCGGCTCTCAGTGTCCTGGACGTGGACGGTATGAAGGTGAA
AGGCAGAGCAGTGAAGATTAGACCGAAGACCAAGGACTGGCTGAAAGGTTTGCGAGAGGAGATCATTCGG
AAACGAGACAGCATGGCCCCCGTGTCTCCCACTGCCAACTCCTGTTTGCTGGAGGAAAACTTTGACTTCA
CAAGTTTGGACTATGAGTCAGAAGGGGATATTCTTGAAGACGATGAAGACTACTTGGTGGATGAATTCAA
TCAGCCTGGAGTCTCGGACAGTGAACTCGGGGGAGACGACCTCTCTGATGTCCCCGGCCCCACAGCACTG
GCTCCTCCCAGCAAGTCACCTGCTCTCACCAAAAAGAAGCAGCATCCAACGTACAAAGATGACGCGGACC
TGGTGGAGCTCAAGCGGGAGCTGGAAGCCGTCGGGGAGTTCCGCCACCGTTCTCCGAGCAGGTCTCTGTC
GGTCCCCAACCGGCCTCGGCCACCTCAACCCCCGCAGAGACCCCCCCCTCCAACCGGTTTAATGGTGAAA
AAGTCGGCTTCAGATGCGTCCATCTCCTCCGGCACCCATGGACAGTATTCAATTTTGCAGACGGCAAGAC
TTCTACCAGGAGCACCTCAGCAACCTCCCAAGGCTCGGACTGGAATAAGTAAACCTTATAATGTCAAGCA
GATCAAAACCACCAATGCCCAGGAGGCAGAAGCAGCAATCCGGTGTCTCCTGGAAGCCAGAGGAGGTGCC
TCCGAAGAAGCCCTAAGTGCCGTGGCCCCAAGGGACCTTGAAGCATCCTCTGAACCAGAGCCCACACCGG
GGGCAGCCAAACCAGAGACCCCACAGGCGCCCCCACTCCTTCCCCGTCGGCCCCCACCCAGAGTTCCTGC
CATCAAGAAGCCAACCTTGAGAAGGACAGGAAAGATTGTTTTTTGCTCTCGCTCTCAAGCTTCTCAGCCT
TGCTTACTGCTTCAAAGACATGAGTTTGTAAGGACAGTAGCAGCCCAAAGACTGGCATCTGTAGACACAT
CTGGATCTTCCGTTTGA

Translation (1288 aa):
MALSKGLRLLGRLGAEGDCSVLLEARGRDDCLLFEAGTVATLAPEEKEVIKGQYGKLTDAYGCLGELRLK
SGGTSLSFLVLVTGCTSVGRIPDAEIYKITATDFYPLQEEAKEEERLIALKKILSSGVFYFSWPNDGSRF
DLTVRTQKQGDDSSEWGNSFFWNQLLHVPLRQHQVSCCDWLLKIICGVVTIRTVYASHKQAKACLVSRVS
CERTGTRFHTRGVNDDGHVSNFVETEQMIYMDDGVSSFVQIRGSVPLFWEQPGLQVGSHHLRLHRGLEAN
APAFDRHMVLLKEQYGQQVVVNLLGSRGGEEVLNRAFKKLLWASCHAGDTPMINFDFHQFAKGGKLEKLE
TLLRPQLKLHWEDFDVFTKGENVSPRFQKGTLRMNCLDCLDRTNTVQSFIALEVLHLQLKTLGLSSKPIV
DRFVESFKAMWSLNGHSLSKVFTGSRALEGKAKVGKLKDGARSMSRTIQSNFFDGVKQEAIKLLLVGDVY
GEEVADKGGMLLDSTALLVTPRILKAMTERQSEFTNFKRIRIAMGTWNVNGGKQFRSNVLRTAELTDWLL
DSPQLSGATDSQDDSSPADIFAVGFEEMVELSAGNIVNASTTNKKMWGEQLQKAISRSHRYILLTSAQLV
GVCLYIFVRPYHVPFIRDVAIDTVKTGMGGKAGNKGAVGIRFQFHSTSFCFICSHLTAGQSQVKERNEDY
KEITQKLCFPMGRNVFSHDYVFWCGDFNYRIDLTYEEVFYFVKRQDWKKLLEFDQLQLQKSSGKIFKDFH
EGAINFGPTYKYDVGSAAYDTSDKCRTPAWTDRVLWWRKKHPFDKTAGELNLLDSDLDVDTKVRHTWSPG
ALQYYGRAELQASDHRPVLAIVEVEVQEVDVGARERVFQEVSSFQGPLDATVVVNLQSPTLEEKNEFPED
LRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGMKVKGRAVKIRPKTKDWLKGLREEIIR
KRDSMAPVSPTANSCLLEENFDFTSLDYESEGDILEDDEDYLVDEFNQPGVSDSELGGDDLSDVPGPTAL
APPSKSPALTKKKQHPTYKDDADLVELKRELEAVGEFRHRSPSRSLSVPNRPRPPQPPQRPPPPTGLMVK
KSASDASISSGTHGQYSILQTARLLPGAPQQPPKARTGISKPYNVKQIKTTNAQEAEAAIRCLLEARGGA
SEEALSAVAPRDLEASSEPEPTPGAAKPETPQAPPLLPRRPPPRVPAIKKPTLRRTGKIVFCSRSQASQP
CLLLQRHEFVRTVAAQRLASVDTSGSSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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