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Report for CCDS91671.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91671.1 Public Homo sapiens 12 CAPRIN2 24 110 108 CCDS HistoryNCBI Gene:65981Re-query CCDS DB by CCDS ID:91671.1Re-query CCDS DB by GeneID:65981See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91671.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000690126.1 ENSP00000510009.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000690126.1Link to Ensembl Protein Viewer:ENSP00000510009.1Re-query CCDS DB by Nucleotide ID:ENST00000690126Re-query CCDS DB by Protein ID:ENSP00000510009
Original member Current member NCBI NM_001385550.1 NP_001372479.1 Accepted alive Link to Nucleotide Sequence:NM_001385550.1Link to Protein Sequence:NP_001372479.1Re-query CCDS DB by Nucleotide ID:NM_001385550Re-query CCDS DB by Protein ID:NP_001372479Link to BLAST:NP_001372479.1
Original member Current member NCBI NM_001385551.1 NP_001372480.1 Accepted alive Link to Nucleotide Sequence:NM_001385551.1Link to Protein Sequence:NP_001372480.1Re-query CCDS DB by Nucleotide ID:NM_001385551Re-query CCDS DB by Protein ID:NP_001372480Link to BLAST:NP_001372480.1
Original member Current member NCBI NM_001385552.1 NP_001372481.1 Accepted alive Link to Nucleotide Sequence:NM_001385552.1Link to Protein Sequence:NP_001372481.1Re-query CCDS DB by Nucleotide ID:NM_001385552Re-query CCDS DB by Protein ID:NP_001372481Link to BLAST:NP_001372481.1
Original member Current member NCBI NM_001385554.1 NP_001372483.1 Accepted alive Link to Nucleotide Sequence:NM_001385554.1Link to Protein Sequence:NP_001372483.1Re-query CCDS DB by Nucleotide ID:NM_001385554Re-query CCDS DB by Protein ID:NP_001372483Link to BLAST:NP_001372483.1

Chromosomal Locations for CCDS 91671.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 30710444 30710514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30711566 30711629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30713785 30713885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30714959 30715141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30716508 30716676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30719079 30719225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30720811 30720915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30723259 30723314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30724370 30724451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30725966 30726088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30728648 30729325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30730239 30730282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30731343 30731403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1884 nt):
ATGCTAATACAATCAGAGAAAAAAACACAATTATCGAAGACTGAATCTGTCAAAGAGTCAGAGTCTCTAA
TGGAATTTGCCCAGCCAGAGATACAACCACAAGAGTTTCTTAACAGACGCTATATGACAGAAGTAGATTA
TTCAAACAAACAAGGCGAAGAGCAACCTTGGGAAGCAGATTATGCTAGAAAACCAAATCTCCCAAAACGT
TGGGATATGCTTACTGAACCAGATGGTCAAGAGAAGAAACAGGAGTCCTTTAAGTCCTGGGAGGCTTCTG
GTAAGCACCAGGAGGTATCCAAGCCTGCAGTTTCCTTAGAACAGAGGAAACAAGACACCTCAAAACTCAG
GTCTACTCTGCCGGAAGAGCAGAAGAAGCAGGAGATCTCCAAATCCAAGCCATCTCCTAGCCAGTGGAAG
CAAGATACACCTAAATCCAAAGCAGGGTATGTTCAAGAGGAACAAAAGAAACAGGAGACACCAAAGCTGT
GGCCAGTTCAGCTGCAGAAAGAACAAGATCCAAAGAAGCAAACTCCAAAGTCTTGGACACCTTCCATGCA
GAGCGAACAGAACACCACCAAGTCATGGACCACTCCCATGTGTGAAGAACAGGATTCAAAACAGCCAGAG
ACTCCAAAATCCTGGGAAAACAATGTTGAGAGTCAAAAACACTCTTTAACATCACAGTCACAGATTTCTC
CAAAGTCCTGGGGAGTAGCTACAGCAAGCCTCATACCAAATGACCAGCTGCTGCCCAGGAAGTTGAACAC
AGAACCCAAAGATGTGCCTAAGCCTGTGCATCAGCCTGTAGGTTCTTCCTCTACCCTTCCGAAGGATCCA
GTATTGAGGAAAGAAAAACTGCAGGATCTGATGACTCAGATTCAAGGAACTTGTAACTTTATGCAAGAGT
CTGTTCTTGACTTTGACAAACCTTCAAGTGCAATTCCAACGTCACAACCGCCTTCAGCTACTCCAGGTAG
CCCCGTAGCATCTAAAGAACAAAATCTGTCCAGTCAAAGTGATTTTCTTCAAGAGCCGTTACAGGCTACT
TCTTCTCCAGTTACTTGTAGCTCAAATGCTTGCTTGGTTACTACCGATCAGGCTTCTTCTGGATCTGAAA
CAGAGTTTATGACCTCAGAGACTCCTGAGGCAGCAATTCCCCCAGGCAAGCAACCGTCTTCACTAGCTTC
TCCAAATCCTCCCATGGCAAAGGGCTCTGAACAGGGCTTCCAGTCACCTCCAGCAAGTAGTAGTTCAGTA
ACCATTAACACAGCACCCTTTCAAGCCATGCAGACAGTATTTAACGTTAATGCACCTCTGCCTCCACGAA
AAGAACAAGAAATAAAAGAATCCCCTTATTCACCTGGCTACAATCAAAGTTTTACCACAGCAAGTACACA
AACACCACCCCAGTGCCAACTGCCATCTATACATGTAGAACAAACTGTCCATTCTCAAGAGACTGCAAAT
TATCATCCTGATGGAACTATTCAAGTAAGCAATGGTAGCCTTGCCTTTTACCCAGCACAGACGAATGTGT
TTCCCAGACCTACTCAGCCATTTGTCAATAGCCGGGGATCTGTTAGAGGATGTACTCGTGGTGGGAGATT
AATAACCAATTCCTATCGGTCCCCTGGTGGTTATAAAGGTTTTGATACTTATAGAGGACTCCCTTCAATT
TCCAATGGAAATTATAGCCAGCTGCAGTTCCAAGCTAGAGAGTATTCTGGAGCACCTTATTCCCAAAGGG
ATAATTTCCAGCAGTGTTATAAGCGAGGAGGGACATCTGGTGGTCCACGAGCAAATTCGAGAGCTAACTG
CTTCATTATGAGAAACTCACTGTTGCTAATAAAACAGCAGGGTGGAGTGATTCTTCTCAGGTGA

Translation (627 aa):
MLIQSEKKTQLSKTESVKESESLMEFAQPEIQPQEFLNRRYMTEVDYSNKQGEEQPWEADYARKPNLPKR
WDMLTEPDGQEKKQESFKSWEASGKHQEVSKPAVSLEQRKQDTSKLRSTLPEEQKKQEISKSKPSPSQWK
QDTPKSKAGYVQEEQKKQETPKLWPVQLQKEQDPKKQTPKSWTPSMQSEQNTTKSWTTPMCEEQDSKQPE
TPKSWENNVESQKHSLTSQSQISPKSWGVATASLIPNDQLLPRKLNTEPKDVPKPVHQPVGSSSTLPKDP
VLRKEKLQDLMTQIQGTCNFMQESVLDFDKPSSAIPTSQPPSATPGSPVASKEQNLSSQSDFLQEPLQAT
SSPVTCSSNACLVTTDQASSGSETEFMTSETPEAAIPPGKQPSSLASPNPPMAKGSEQGFQSPPASSSSV
TINTAPFQAMQTVFNVNAPLPPRKEQEIKESPYSPGYNQSFTTASTQTPPQCQLPSIHVEQTVHSQETAN
YHPDGTIQVSNGSLAFYPAQTNVFPRPTQPFVNSRGSVRGCTRGGRLITNSYRSPGGYKGFDTYRGLPSI
SNGNYSQLQFQAREYSGAPYSQRDNFQQCYKRGGTSGGPRANSRANCFIMRNSLLLIKQQGGVILLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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