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Report for CCDS91666.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91666.1 Public Homo sapiens 12 BMAL2 24 110 108 CCDS HistoryNCBI Gene:56938Re-query CCDS DB by CCDS ID:91666.1Re-query CCDS DB by GeneID:56938See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91666.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000544915.5 ENSP00000442438.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544915.5Link to Ensembl Protein Viewer:ENSP00000442438.1Re-query CCDS DB by Nucleotide ID:ENST00000544915Re-query CCDS DB by Protein ID:ENSP00000442438
Original member Current member NCBI NM_001394526.1 NP_001381455.1 Accepted alive Link to Nucleotide Sequence:NM_001394526.1Link to Protein Sequence:NP_001381455.1Re-query CCDS DB by Nucleotide ID:NM_001394526Re-query CCDS DB by Protein ID:NP_001381455Link to BLAST:NP_001381455.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001381455.1 602 Q8WYA1-5 602 100% 0 0

Chromosomal Locations for CCDS 91666.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 27333073 27333103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27368262 27368412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27376346 27376387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27380247 27380404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27385481 27385560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27387228 27387320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27389179 27389296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27390096 27390239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27400534 27400774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27401257 27401363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27401524 27401674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27402619 27402677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27403433 27403541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27415869 27415947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27418088 27418196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27420396 27420532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGGCGGCGGAAGAGGAGGCTGCGGCGGGAGGTAAAGTGTTGAGAGAGGAGAACCAGTGCATTGCTCCTG
TGGTTTCCAGCCGCGTGAGTCCAGGGACAAGACCAACAGCTATGGGGTCTTTCAGCTCACACATGACAGA
GTTTCCACGAAAACGCAAAGGAAGTGATTCAGACCCATCCCAAGTGGAAGATGGTGAACACCAAGTTAAA
ATGAAGGCCTTCAGAGAAGCTCATAGCCAAACTGAAAAGCGGAGGAGAGATAAAATGAATAACCTGATTG
AAGAACTGTCTGCAATGATCCCTCAGTGCAACCCCATGGCGCGTAAACTGGACAAACTTACAGTTTTAAG
AATGGCTGTTCAACACTTGAGATCTTTAAAAGGCTTGACAAATTCTTATGTGGGAAGTAATTATAGACCA
TCATTTCTTCAGGATAATGAGCTCAGACATTTAATCCTTAAGACTGCAGAAGGCTTCTTATTTGTGGTTG
GATGTGAAAGAGGAAAAATTCTCTTCGTTTCTAAGTCAGTCTCCAAAATACTTAATTATGATCAGGCTAG
TTTGACTGGACAAAGCTTATTTGACTTCTTACATCCAAAAGATGTTGCCAAAGTAAAGGAACAACTTTCT
TCTTTTGATATTTCACCAAGAGAAAAGCTAATAGATGCCAAAACTGGTTTGCAAGTTCACAGTAATCTCC
ACGCTGGAAGGACACGTGTGTATTCTGGCTCAAGACGATCTTTTTTCTGTCGGATAAAGAGTTGTAAAAT
CTCTGTCAAAGAAGAGCATGGATGCTTACCCAACTCAAAGAAGAAAGAGCACAGAAAATTCTATACTATC
CATTGCACTGGTTACTTGAGAAGCTGGCCTCCAAATATTGTTGGAATGGAAGAAGAAAGGAACAGTAAGA
AAGACAACAGTAATTTTACCTGCCTTGTGGCCATTGGAAGATTACAGCCATATATTGTTCCACAGAACAG
TGGAGAGATTAATGTGAAACCAACTGAATTTATAACCCGGTTTGCAGTGAATGGAAAATTTGTCTATGTA
GATCAAAGGGCAACAGCGATTTTAGGATATCTGCCTCAGGAACTTTTGGGAACTTCTTGTTATGAATATT
TTCATCAAGATGACCACAATAATTTGACTGACAAGCACAAAGCAGTTCTACAGAGTAAGGAGAAAATACT
TACAGATTCCTACAAATTCAGAGCAAAAGATGGCTCTTTTGTAACTTTAAAAAGCCAATGGTTTAGTTTC
ACAAATCCTTGGACAAAAGAACTGGAATATATTGTATCTGTCAACACTTTAGTTTTGGGACATAGTGAGC
CTGGAGAAGCATCATTTTTACCTTGTAGCTCTCAATCATCAGAAGAATCCTCTAGACAGTCCTGTATGAG
TGTACCTGGAATGTCTACTGGAACAGTACTTGGTGCTGGTAGTATTGGAACAGATATTGCAAATGAAATT
CTGGATTTACAGAGGTTACAGTCTTCTTCATACCTTGATGATTCGAGTCCAACAGGTTTAATGAAAGATA
CTCATACTGTAAACTGCAGGAGTATGTCAAATAAGGAGTTGTTTCCACCAAGTCCTTCTGAAATGGGGGA
GCTAGAGGCTACCAGGCAAAACCAGAGTACTGTTGCTGTCCACAGCCATGAGCCACTCCTCAGTGATGGT
GCACAGTTGGATTTCGATGCCCTATGTGACAATGATGACACAGCCATGGCTGCATTTATGAATTACTTAG
AAGCAGAGGGGGGCCTGGGAGACCCTGGGGACTTCAGTGACATCCAGTGGACCCTCTAG

Translation (602 aa):
MAAEEEAAAGGKVLREENQCIAPVVSSRVSPGTRPTAMGSFSSHMTEFPRKRKGSDSDPSQVEDGEHQVK
MKAFREAHSQTEKRRRDKMNNLIEELSAMIPQCNPMARKLDKLTVLRMAVQHLRSLKGLTNSYVGSNYRP
SFLQDNELRHLILKTAEGFLFVVGCERGKILFVSKSVSKILNYDQASLTGQSLFDFLHPKDVAKVKEQLS
SFDISPREKLIDAKTGLQVHSNLHAGRTRVYSGSRRSFFCRIKSCKISVKEEHGCLPNSKKKEHRKFYTI
HCTGYLRSWPPNIVGMEEERNSKKDNSNFTCLVAIGRLQPYIVPQNSGEINVKPTEFITRFAVNGKFVYV
DQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRAKDGSFVTLKSQWFSF
TNPWTKELEYIVSVNTLVLGHSEPGEASFLPCSSQSSEESSRQSCMSVPGMSTGTVLGAGSIGTDIANEI
LDLQRLQSSSYLDDSSPTGLMKDTHTVNCRSMSNKELFPPSPSEMGELEATRQNQSTVAVHSHEPLLSDG
AQLDFDALCDNDDTAMAAFMNYLEAEGGLGDPGDFSDIQWTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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