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Report for CCDS8753.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8753.1 Public Homo sapiens 12 RPAP3 24 110 108 CCDS HistoryNCBI Gene:79657Re-query CCDS DB by CCDS ID:8753.1Re-query CCDS DB by GeneID:79657See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8753.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000005386.8 ENSP00000005386.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000005386.8Link to Ensembl Protein Viewer:ENSP00000005386.3Re-query CCDS DB by Nucleotide ID:ENST00000005386Re-query CCDS DB by Protein ID:ENSP00000005386
Original member Current member NCBI NM_024604.3 NP_078880.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024604.3Link to Protein Sequence:NP_078880.2Re-query CCDS DB by Nucleotide ID:NM_024604Re-query CCDS DB by Protein ID:NP_078880Link to BLAST:NP_078880.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078880.2 665 Q9H6T3-1 665 100% 0 0

Chromosomal Locations for CCDS 8753.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 47663505 47663590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47666980 47667080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47667754 47667851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47668916 47669102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47670107 47670345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47679493 47679594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47679704 47679774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47681696 47681817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47686780 47686907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47687876 47688001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47689125 47689195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47690518 47690639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47696276 47696403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47697597 47697719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47701464 47701604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47702688 47702840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1998 nt):
ATGACTTCAGCAAATAAAGCAATCGAATTACAACTACAAGTGAAACAAAATGCAGAAGAATTACAAGACT
TTATGCGGGATTTAGAAAACTGGGAAAAAGACATTAAACAAAAGGATATGGAACTAAGAAGACAGAATGG
TGTTCCTGAAGAGAATTTACCTCCTATTCGAAATGGGAATTTTAGGAAAAAGAAGAAAGGCAAAGCTAAA
GAGTCTTCCAAAAAAACCAGAGAGGAAAACACAAAAAACAGGATAAAATCTTATGATTATGAGGCATGGG
CAAAACTTGATGTGGACCGTATCCTTGATGAGCTTGACAAAGACGATAGTACCCATGAGTCTCTGTCTCA
AGAATCAGAGTCGGAAGAAGATGGGATTCATGTAGATTCACAAAAGGCTCTTGTTTTAAAAGAAAAGGGC
AATAAATACTTCAAACAAGGAAAATATGATGAAGCAATTGACTGCTACACAAAAGGCATGGATGCCGATC
CATATAATCCCGTGTTGCCAACGAACAGAGCGTCAGCATATTTTAGACTGAAAAAATTTGCTGTTGCTGA
GTCTGATTGTAATTTAGCAGTTGCCTTGAATAGAAGTTATACAAAGGCTTATTCCAGACGAGGTGCTGCT
CGATTTGCTTTGCAAAAATTAGAAGAGGCCAAAAAAGATTATGAAAGAGTATTAGAACTAGAACCAAATA
ACTTTGAAGCAACAAATGAACTCAGGAAAATCAGTCAGGCTTTAGCATCCAAAGAAAACTCATATCCAAA
GGAAGCTGACATAGTGATTAAGTCAACAGAAGGAGAGCGAAAGCAAATTGAAGCACAACAGAATAAGCAG
CAGGCCATTTCAGAGAAAGATCGGGGGAATGGATTTTTCAAAGAGGGGAAATATGAAAGAGCAATTGAAT
GCTATACTCGAGGGATAGCAGCAGATGGTGCTAATGCCCTTCTTCCAGCTAACAGAGCTATGGCCTATCT
GAAGATTCAGAAATATGAAGAAGCTGAAAAAGACTGCACACAAGCCATTTTATTAGATGGCTCATATTCT
AAAGCTTTTGCCAGAAGAGGAACTGCAAGAACATTTTTGGGAAAGCTAAATGAGGCAAAACAAGATTTTG
AAACTGTTTTACTTCTGGAACCTGGAAATAAGCAAGCAGTAACTGAACTCTCCAAAATTAAAAAGGAATT
AATTGAGAAAGGACACTGGGATGATGTCTTTCTTGATTCCACACAAAGACAAAATGTGGTAAAACCCATT
GATAATCCACCGCATCCTGGATCAACTAAACCACTCAAGAAGGTTATTATTGAAGAAACTGGTAATTTGA
TACAGACTATTGATGTGCCAGATAGCACTACTGCTGCTGCTCCAGAGAATAATCCTATTAATCTAGCAAA
TGTAATAGCAGCCACAGGCACCACAAGTAAGAAGAATTCAAGCCAAGATGACCTTTTTCCCACAAGTGAT
ACTCCAAGAGCAAAAGTATTGAAAATAGAAGAAGTCAGTGATACTTCATCCCTGCAACCTCAAGCCAGTT
TGAAGCAGGATGTATGTCAGTCTTACAGCGAGAAAATGCCCATAGAGATAGAACAAAAACCTGCTCAGTT
TGCCACAACTGTTCTTCCTCCAATTCCTGCAAACTCGTTCCAGCTCGAATCTGATTTCAGACAATTGAAA
AGTTCTCCAGATATGTTGTATCAGTATTTAAAGCAAATTGAACCATCTTTGTATCCTAAGTTGTTTCAGA
AAAATCTGGATCCAGATGTATTCAACCAGATCGTTAAAATTCTGCATGACTTTTACATTGAGAAAGAAAA
GCCATTACTCATCTTTGAAATCTTACAAAGACTTTCTGAACTAAAAAGGTTTGATATGGCAGTGATGTTT
ATGTCAGAAACAGAGAAAAAGATTGCACGTGCATTATTTAATCACATAGACAAGTCAGGATTGAAGGATA
GTTCTGTCGAAGAACTCAAGAAAAGATACGGTGGTTGA

Translation (665 aa):
MTSANKAIELQLQVKQNAEELQDFMRDLENWEKDIKQKDMELRRQNGVPEENLPPIRNGNFRKKKKGKAK
ESSKKTREENTKNRIKSYDYEAWAKLDVDRILDELDKDDSTHESLSQESESEEDGIHVDSQKALVLKEKG
NKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAA
RFALQKLEEAKKDYERVLELEPNNFEATNELRKISQALASKENSYPKEADIVIKSTEGERKQIEAQQNKQ
QAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYS
KAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKKELIEKGHWDDVFLDSTQRQNVVKPI
DNPPHPGSTKPLKKVIIEETGNLIQTIDVPDSTTAAAPENNPINLANVIAATGTTSKKNSSQDDLFPTSD
TPRAKVLKIEEVSDTSSLQPQASLKQDVCQSYSEKMPIEIEQKPAQFATTVLPPIPANSFQLESDFRQLK
SSPDMLYQYLKQIEPSLYPKLFQKNLDPDVFNQIVKILHDFYIEKEKPLLIFEILQRLSELKRFDMAVMF
MSETEKKIARALFNHIDKSGLKDSSVEELKKRYGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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