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Report for CCDS86338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86338.1 Public Homo sapiens 12 SETD1B 24 110 108 CCDS HistoryNCBI Gene:23067Re-query CCDS DB by CCDS ID:86338.1Re-query CCDS DB by GeneID:23067See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86338.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000604567.6 ENSP00000474253.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000604567.6Link to Ensembl Protein Viewer:ENSP00000474253.1Re-query CCDS DB by Nucleotide ID:ENST00000604567Re-query CCDS DB by Protein ID:ENSP00000474253
Original member Current member EBI ENST00000619791.1 ENSP00000481531.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619791.1Link to Ensembl Protein Viewer:ENSP00000481531.1Re-query CCDS DB by Nucleotide ID:ENST00000619791Re-query CCDS DB by Protein ID:ENSP00000481531
Original member Current member NCBI NM_001353345.2 NP_001340274.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001353345.2Link to Protein Sequence:NP_001340274.1Re-query CCDS DB by Nucleotide ID:NM_001353345Re-query CCDS DB by Protein ID:NP_001340274Link to BLAST:NP_001340274.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001340274.1 1966 Q9UPS6-1 1966 100% 0 0

Chromosomal Locations for CCDS 86338.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 121804738 121804911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121805118 121805216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121805835 121806105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121808208 121808320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121809603 121810835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121814106 121814930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121817033 121817294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121817370 121817704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121817799 121817904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121819404 121819895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121822490 121823749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121825200 121825366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121827519 121827650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121827735 121827854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121827933 121828070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121830066 121830239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5901 nt):
ATGGAGAACAGTCACCCCCCCCACCACCACCACCAGCAGCCCCCGCCGCAGCCCGGCCCTTCGGGCGAGA
GGAGGAACCACCATTGGAGAAGTTACAAGTTGATGATTGACCCGGCTCTGAAAAAGGGGCATCATAAACT
GTACCGCTACGATGGGCAGCATTTCAGCCTGGCGATGTCCAGCAACCGCCCGGTGGAAATTGTCGAAGAT
CCCCGGGTCGTCGGGATCTGGACCAAAAACAAGGAGCTGGAGCTGTCGGTGCCCAAATTCAAGATCGATG
AGTTCTACGTGGGCCCGGTGCCTCCGAAGCAGGTGACATTTGCCAAGCTGAATGATAACATCCGTGAAAA
CTTCCTGAGGGACATGTGCAAGAAGTATGGGGAGGTGGAGGAGGTGGAGATTTTGTACAACCCCAAGACC
AAGAAGCACCTGGGCATCGCCAAGGTGGTCTTTGCCACGGTCCGGGGAGCCAAGGATGCCGTTCAGCACT
TGCACAGCACTTCCGTCATGGGCAACATTATCCACGTGGAGCTGGACACCAAAGGGGAAACCCGAATGCG
GTTCTATGAACTGTTGGTCACTGGCCGATACACCCCCCAGACCCTCCCAGTGGGCGAGCTGGACGCTGTC
TCTCCAATCGTGAATGAGACCCTGCAGCTGTCAGATGCCCTGAAGCGCCTCAAGGATGGAGGCCTGTCTG
CAGGCTGTGGCTCCGGCTCCTCCTCTGTCACCCCCAATAGCGGTGGGACACCCTTCTCCCAGGACACAGC
TTATTCCAGCTGCCGCCTGGACACACCCAACTCCTATGGACAGGGCACCCCGCTCACACCGCGCCTGGGC
ACCCCTTTCTCACAGGACTCCAGCTACTCCAGCCGCCAGCCCACACCCTCATACCTCTTCAGCCAGGACC
CTGCAGTGACCTTCAAGGCCCGGCGCCACGAGAGCAAGTTCACGGACGCCTACAACCGCCGCCACGAACA
TCATTATGTACACAATTCTCCCGCGGTCACTGCGGTGGCCGGGGCCACAGCCGCTTTCCGGGGTTCCTCG
GACCTCCCGTTCGGAGCAGTCGGCGGCACTGGGGGCAGCAGCGGTCCCCCGTTCAAGGCTCAACCACAGG
ATTCAGCCACATTTGCCCACACTCCACCACCCGCCCAAGCAACCCCTGCTCCTGGATTCAAGTCTGCTTT
CTCTCCGTATCAGACCCCAGTGGCCCACTTCCCTCCACCCCCGGAAGAGCCCACCGCCACAGCCGCTTTT
GGGGCCCGCGACAGTGGGGAGTTCCGGAGGGCACCGGCGCCCCCACCCCTGCCACCTGCTGAGCCTCTGG
CCAAGGAGAAGCCAGGCACGCCACCCGGCCCGCCGCCCCCCGACACCAACAGCATGGAGCTGGGCGGCCG
GCCCACCTTCGGCTGGAGTCCTGAGCCCTGTGACAGCCCTGGCACGCCCACGCTGGAGTCGTCCCCTGCA
GGGCCAGAGAAACCCCACGACAGCCTGGACTCGCGCATCGAGATGCTGCTGAAGGAGCAGCGCACCAAGC
TGCTCTTCCTGAGGGAGCCGGACTCGGACACCGAGCTGCAGATGGAGGGCAGCCCCATCTCCTCCTCCTC
CTCCCAGCTCTCCCCACTGGCCCCCTTTGGCACCAACTCCCAGCCAGGCTTCCGGGGCCCCACGCCCCCC
TCGTCACGCCCCTCCAGCACCGGCCTGGAGGATATCAGCCCAACACCCCTCCCAGACTCCGACGAGGACG
AGGAGCTCGACCTGGGCCTTGGGCCTCGGCCTCCACCTGAGCCAGGCCCCCCGGACCCTGCTGGGCTTCT
GAGCCAGACAGCTGAGGTGGCCTTGGACCTGGTTGGAGACAGAACCCCGACCTCAGAGAAGATGGATGAG
GGCCAGCAGTCCTCAGGCGAGGACATGGAGATCTCGGATGACGAGATGCCCTCGGCCCCCATCACCAGCG
CTGACTGCCCCAAGCCCATGGTGGTGACCCCAGGAGCGGCAGCCGTGGCAGCCCCTTCTGTGCTAGCCCC
AACCCTGCCGCTGCCCCCGCCACCTGGCTTCCCCCCGCTGCCCCCCCCACCACCACCACCCCCACCGCAG
CCTGGCTTCCCCATGCCCCCACCGCTGCCCCCACCGCCGCCCCCACCCCCTCCAGCCCACCCTGCTGTGA
CAGTGCCCCCACCACCCTTGCCAGCGCCGCCTGGAGTCCCGCCCCCACCCATCCTGCCACCACTGCCCCC
CTTTCCGCCGGGCCTGTTCCCTGTGATGCAGGTGGACATGAGCCACGTGCTGGGTGGCCAGTGGGGCGGC
ATGCCCATGTCCTTCCAGATGCAAACGCAGGTGCTCAGCCGGCTGATGACGGGCCAGGGCGCCTGCCCCT
ACCCGCCCTTCATGGCCGCTGCGGCCGCCGCTGCCTCAGCTGGGCTCCAGTTTGTCAACCTGCCGCCCTA
CCGGGGCCCCTTCTCCCTGAGCAACTCCGGCCCAGGCCGCGGGCAGCACTGGCCACCACTGCCCAAGTTT
GACCCGTCAGTGCCTCCACCAGGCTACATGCCACGCCAGGAGGACCCACACAAAGCCACGGTGGATGGCG
TCCTGCTGGTGGTCCTCAAAGAACTCAAGGCCATCATGAAGCGTGACCTGAACCGCAAGATGGTGGAAGT
GGTGGCTTTCCGGGCCTTTGACGAGTGGTGGGACAAGAAGGAGCGGATGGCCAAGGCCTCGCTGACCCCG
GTGAAGTCGGGCGAGCACAAGGACGAGGACAGGCCGAAGCCCAAGGACCGCATCGCCTCGTGCCTGCTGG
AGTCATGGGGCAAGGGCGAGGGCCTGGGCTACGAGGGCCTGGGCCTGGGCATTGGGCTGCGTGGGGCCAT
TCGCCTGCCCTCCTTCAAGGTCAAGAGGAAGGAGCCACCAGACACCACCTCATCTGGCGACCAGAAGCGG
CTGCGGCCCTCGACCTCTGTGGATGAGGAAGATGAAGAGTCCGAGCGAGAGCGAGACCGGGATATGGCAG
ACACCCCCTGTGAGCTCGCCAAGCGGGACCCCAAGGGCGTGGGTGTGCGGCGGCGGCCGGCGCGGCCTCT
GGAGCTGGACAGTGGTGGGGAGGAGGACGAGAAGGAGTCATTGTCGGCGTCCTCGTCCTCATCCGCGTCA
TCATCCTCGGGGTCCTCAACCACCTCACCCTCGTCCTCGGCCTCCGACAAGGAGGAGGAACAGGAGAGCA
CCGAGGAGGAAGAGGAGGCGGAGGAGGAGGAGGAGGAGGAAGTCCCCAGGAGCCAGCTCTCCTCCTCCTC
AACCTCATCCACATCAGATAAGGATGACGACGATGACGACAGTGATGACCGGGACGAGTCTGAGAACGAT
GACGAGGACACAGCCCTGTCAGAGGCGAGTGAGAAGGACGAAGGGGACTCGGATGAAGAGGAGACAGTGA
GCATTGTAACCTCCAAGGCCGAAGCCACGTCGTCCAGTGAGAGTTCCGAGTCTTCTGAGTTTGAGTCAAG
CTCCGAGTCCTCGCCCTCATCCTCGGAGGATGAGGAGGAGGTAGTGGCCAGGGAAGAGGAGGAAGAAGAG
GAGGAGGAGGAGATGGTGGCCGAGGAAAGCATGGCTTCTGCAGGCCCTGAGGACTTTGAGCAGGACGGGG
AGGAAGCGGCTCTGGCCCCGGGGGCACCTGCAGTGGACTCGTTGGGCATGGAAGAGGAGGTGGACATCGA
GACTGAGGCTGTGGCCCCTGAGGAGCGGCCCTCCATGCTGGACGAGCCCCCCTTGCCTGTGGGTGTTGAA
GAGCCAGCGGACTCCAGGGAGCCGCCTGAGGAACCAGGCCTGAGCCAGGAAGGGGCCATGTTGCTGTCTC
CAGAGCCCCCTGCCAAGGAGGTGGAGGCTCGACCCCCATTGTCCCCTGAGCGAGCTCCAGAACATGACCT
GGAAGTGGAGCCGGAGCCCCCTATGATGCTCCCCTTGCCGCTGCAACCACCATTGCCGCCCCCACGACCA
CCCCGGCCACCCAGCCCACCGCCGGAGCCTGAGACCACAGATGCCTCACACCCATCTGTCCCTCCGGAGC
CCCTTGCCGAGGACCACCCCCCGCATACTCCAGGCCTCTGTGGCAGCCTGGCCAAGTCGCAGAGCACAGA
GACGGTGCCAGCCACACCAGGCGGGGAGCCCCCGCTATCAGGGGGCAGCAGTGGCCTGTCCCTGAGCTCT
CCGCAAGTGCCCGGCAGCCCCTTCTCCTACCCAGCCCCGTCCCCTAGCTTGAGCAGTGGGGGCCTCCCTC
GGACACCTGGCCGGGACTTCAGCTTCACACCCACCTTCTCCGAGCCCAGCGGGCCCTTGCTCCTGCCCGT
CTGCCCACTCCCCACTGGCCGACGCGATGAACGCTCCGGGCCCCTGGCCTCCCCGGTGCTCCTGGAGACG
GGCCTGCCCCTCCCTCTGCCCCTTCCCCTGCCCTTGCCCTTGGCATTGCCCGCCGTCTTGCGGGCCCAGG
CTCGTGCGCCCACCCCGCTGCCACCCCTGCTGCCCGCCCCCCTGGCCTCTTGCCCTCCCCCAATGAAGAG
GAAGCCGGGCCGGCCCCGGCGATCCCCACCATCTATGCTCTCCTTGGATGGGCCCTTGGTCCGACCACCA
GCAGGGGCCGCCCTTGGAAGGGAACTCCTGCTCCTGCCGGGCCAGCCACAGACCCCCGTCTTCCCCAGCA
CCCATGACCCCCGGACGGTGACCCTGGACTTCCGGAACGCGGGGATCCCAGCCCCTCCACCACCCCTTCC
CCCCCAGCCACCCCCACCCCCACCTCCCCCACCTGTAGAGCCCACCAAGCTGCCCTTTAAGGAGCTAGAC
AACCAGTGGCCCTCCGAGGCCATTCCTCCGGGCCCCCGTGGGCGCGATGAGGTCACTGAGGAATACATGG
AGTTGGCCAAGAGCCGGGGGCCGTGGCGCCGGCCACCTAAGAAGCGCCATGAGGACCTGGTGCCACCTGC
GGGCTCGCCCGAACTCTCGCCACCCCAGCCCCTCTTCCGGCCCCGCTCGGAGTTTGAGGAGATGACCATC
CTGTATGACATCTGGAACGGTGGCATCGATGAGGAGGACATCCGCTTCCTGTGTGTCACCTACGAGCGAC
TGCTACAGCAGGACAATGGCATGGACTGGCTTAACGACACGCTCTGGGTCTACCATCCCTCCACCAGCCT
CTCTTCAGCTAAGAAGAAGAAACGGGACGATGGCATCCGCGAGCACGTGACGGGCTGTGCCCGCAGTGAG
GGCTTCTACACCATCGACAAGAAGGACAAGCTCAGATACCTCAACAGCAGCCGTGCCAGCACCGATGAGC
CCCCCGCAGACACCCAGGGCATGAGCATCCCAGCACAGCCCCACGCCTCCACCCGGGCAGGCTCGGAGCG
GCGTTCGGAGCAGCGCCGCCTGCTGTCCTCCTTCACTGGCAGCTGTGACAGTGACCTGCTCAAGTTCAAC
CAGCTCAAGTTCCGGAAGAAAAAGCTCAAGTTCTGCAAGAGCCACATTCACGACTGGGGCTTGTTCGCCA
TGGAGCCCATCGCGGCTGACGAGATGGTCATCGAGTACGTGGGCCAGAATATCCGTCAGGTGATCGCAGA
CATGCGGGAGAAGCGTTATGAGGACGAGGGCATCGGGAGCAGCTACATGTTCCGGGTGGACCATGACACC
ATCATCGACGCCACCAAGTGCGGCAACTTCGCGCGCTTCATCAACCACAGCTGCAACCCCAACTGCTATG
CCAAGGTGATCACGGTGGAGTCACAGAAGAAGATAGTCATCTACTCGAAGCAGCACATTAACGTCAATGA
GGAGATTACCTATGACTATAAGTTCCCCATCGAGGACGTCAAGATCCCCTGCCTCTGTGGCTCCGAGAAC
TGCCGGGGGACCCTCAACTAG

Translation (1966 aa):
MENSHPPHHHHQQPPPQPGPSGERRNHHWRSYKLMIDPALKKGHHKLYRYDGQHFSLAMSSNRPVEIVED
PRVVGIWTKNKELELSVPKFKIDEFYVGPVPPKQVTFAKLNDNIRENFLRDMCKKYGEVEEVEILYNPKT
KKHLGIAKVVFATVRGAKDAVQHLHSTSVMGNIIHVELDTKGETRMRFYELLVTGRYTPQTLPVGELDAV
SPIVNETLQLSDALKRLKDGGLSAGCGSGSSSVTPNSGGTPFSQDTAYSSCRLDTPNSYGQGTPLTPRLG
TPFSQDSSYSSRQPTPSYLFSQDPAVTFKARRHESKFTDAYNRRHEHHYVHNSPAVTAVAGATAAFRGSS
DLPFGAVGGTGGSSGPPFKAQPQDSATFAHTPPPAQATPAPGFKSAFSPYQTPVAHFPPPPEEPTATAAF
GARDSGEFRRAPAPPPLPPAEPLAKEKPGTPPGPPPPDTNSMELGGRPTFGWSPEPCDSPGTPTLESSPA
GPEKPHDSLDSRIEMLLKEQRTKLLFLREPDSDTELQMEGSPISSSSSQLSPLAPFGTNSQPGFRGPTPP
SSRPSSTGLEDISPTPLPDSDEDEELDLGLGPRPPPEPGPPDPAGLLSQTAEVALDLVGDRTPTSEKMDE
GQQSSGEDMEISDDEMPSAPITSADCPKPMVVTPGAAAVAAPSVLAPTLPLPPPPGFPPLPPPPPPPPPQ
PGFPMPPPLPPPPPPPPPAHPAVTVPPPPLPAPPGVPPPPILPPLPPFPPGLFPVMQVDMSHVLGGQWGG
MPMSFQMQTQVLSRLMTGQGACPYPPFMAAAAAAASAGLQFVNLPPYRGPFSLSNSGPGRGQHWPPLPKF
DPSVPPPGYMPRQEDPHKATVDGVLLVVLKELKAIMKRDLNRKMVEVVAFRAFDEWWDKKERMAKASLTP
VKSGEHKDEDRPKPKDRIASCLLESWGKGEGLGYEGLGLGIGLRGAIRLPSFKVKRKEPPDTTSSGDQKR
LRPSTSVDEEDEESERERDRDMADTPCELAKRDPKGVGVRRRPARPLELDSGGEEDEKESLSASSSSSAS
SSSGSSTTSPSSSASDKEEEQESTEEEEEAEEEEEEEVPRSQLSSSSTSSTSDKDDDDDDSDDRDESEND
DEDTALSEASEKDEGDSDEEETVSIVTSKAEATSSSESSESSEFESSSESSPSSSEDEEEVVAREEEEEE
EEEEMVAEESMASAGPEDFEQDGEEAALAPGAPAVDSLGMEEEVDIETEAVAPEERPSMLDEPPLPVGVE
EPADSREPPEEPGLSQEGAMLLSPEPPAKEVEARPPLSPERAPEHDLEVEPEPPMMLPLPLQPPLPPPRP
PRPPSPPPEPETTDASHPSVPPEPLAEDHPPHTPGLCGSLAKSQSTETVPATPGGEPPLSGGSSGLSLSS
PQVPGSPFSYPAPSPSLSSGGLPRTPGRDFSFTPTFSEPSGPLLLPVCPLPTGRRDERSGPLASPVLLET
GLPLPLPLPLPLPLALPAVLRAQARAPTPLPPLLPAPLASCPPPMKRKPGRPRRSPPSMLSLDGPLVRPP
AGAALGRELLLLPGQPQTPVFPSTHDPRTVTLDFRNAGIPAPPPPLPPQPPPPPPPPPVEPTKLPFKELD
NQWPSEAIPPGPRGRDEVTEEYMELAKSRGPWRRPPKKRHEDLVPPAGSPELSPPQPLFRPRSEFEEMTI
LYDIWNGGIDEEDIRFLCVTYERLLQQDNGMDWLNDTLWVYHPSTSLSSAKKKKRDDGIREHVTGCARSE
GFYTIDKKDKLRYLNSSRASTDEPPADTQGMSIPAQPHASTRAGSERRSEQRRLLSSFTGSCDSDLLKFN
QLKFRKKKLKFCKSHIHDWGLFAMEPIAADEMVIEYVGQNIRQVIADMREKRYEDEGIGSSYMFRVDHDT
IIDATKCGNFARFINHSCNPNCYAKVITVESQKKIVIYSKQHINVNEEITYDYKFPIEDVKIPCLCGSEN
CRGTLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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