NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7644.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7644.1 Public Homo sapiens 10 CTBP2 24 110 108 CCDS HistoryNCBI Gene:1488Re-query CCDS DB by CCDS ID:7644.1Re-query CCDS DB by GeneID:1488See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7644.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309035.11 ENSP00000311825.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309035.11Link to Ensembl Protein Viewer:ENSP00000311825.6Re-query CCDS DB by Nucleotide ID:ENST00000309035Re-query CCDS DB by Protein ID:ENSP00000311825
Original member Current member NCBI NM_022802.3 NP_073713.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022802.3Link to Protein Sequence:NP_073713.2Re-query CCDS DB by Nucleotide ID:NM_022802Re-query CCDS DB by Protein ID:NP_073713Link to BLAST:NP_073713.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073713.2 985 P56545-2 985 100% 0 0

Chromosomal Locations for CCDS 7644.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 124989518 124989698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 124992695 124992812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 124993202 124993329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 124993855 124993985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 124994469 124994683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 124997964 124998170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125002960 125003104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125003338 125003492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125026082 125027759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2958 nt):
ATGCCAGTTCCCAGCAGGCATATAAATATTGGTCGTTCTCAGAGCTGGGATGCTGCTGGGTGGTACGAGG
GCCCCTGGGAGAACGCCGAGTCCCTGCGGCCTCTGGGGAGGAGAAGCTCCCTGACGTATGGCACAGCAGA
GGGGACTTGGTTTGAGCCAAACCACCGACCACAGGACGCTGCCCTGCCCGTGGCCGCCGAGCCCTACCTG
TACCGGGAGGCCGTTTATAACTCAGTGGCTGCAAGAAAGGGGTCTACTCCTGACTTCACCTTCTACGACA
GCAGACAGGCAGTGATGTCTGGTCGCAGCCCCCTGCTGCCACGGGAGTACTACAGTGATCCGTCTGGAGC
TGCTAGGGTACCCAAAGAGCCTCCCCTCTATCGGGACCCAGGAGTCAGCCGGCCGGTCCCCAGCTACGGA
GTGCTTGGCAGCAGAACGTCATGGGATCCAATGCAAGGCCGGTCACCTGCCCTGCAGGACGCCGGTCACC
TGTACCGGGATCCTGGAGGTAAAATGATCCCTCAGGGGCGGCAGACACAGAGCAGGGCTGCATCTCCCGG
GCGGTATGGACGGGAGCAGCCCGACACCAGGTATGGGGCGGAGGTGCCTGCCTACCCCCTCAGCCAGGTC
TTCAGCGACATCAGCGAAAGACCCATTGACCCTGCCCCTGCCAGACAGGTGGCCCCGACGTGCCTGGTTG
TGGACCCCAGTTCAGCTGCTGCCCCCGAAGGCAGCACAGGGGTGGCCCCAGGGGCCCTGAATCGTGGCTA
CGGGCCTGCCCGGGAAAGCATCCCATCCAAGATGGCTTACGAGACTTACGAAGCTGACCTGTCCACCTTC
CAGGGTCCTGGTGGCAAGAGGACCGTGCTCCCTGAGTTCCTGGCCTTTCTGCGGGCGGAGGGGCTGGCAG
AGGCCACGCTGGGAGCCCTACTGCAGCAGGGCTTTGACTCCCCGGCCGTCCTGGCTACCCTGGAGGACGC
GGATATCAAGTCTGTCGCACCCAACCTGGGCCAGGCCCGTGTTCTGAGCCGCCTGGCCAATAGCTGCAGG
ACCGAAATGCAGCTGCGGAGGCAGGACCGGGGGGGCCCGCTGCCCCGGGCGCGGTCCAGCAGCTTCAGCC
ACCGAAGCGAACTGCTCCATGGTGACTTGGCTTCTCTGGGCGCTGCGGCTCCTCTGCAGACAGCATCCCC
CCGAGCTGGAGACCCGGCTCGCCGTCCCTCCAGCGCACCATCTCAGCACCTCCTGGAGACGGCAGCCACC
TATTCTGCCCCTGGCGTGGGCACCCATGCCCCACACTTCCCCTCCAACTCCGGGTACAGCTCTCCCACCC
CTTGCGCCCTGACAGCGCGTCTGAGCCCCACGTACCCCCTGCAGGCAGGGGTGGCCTTGACTAACCCGGG
CCCCTCAAACCCCCTTCACCCAGGCCCCAGAACAGCCTACTCCACGGCATACACGGTGCCCATGGAGCTG
CTAAAGAGGGAGCGCAACGTGGCCGCCTCTCCGCTGCCCAGCCCTCACGGCAGCCCCCAGGTCTTGCGGA
AGCCAGGTGCACCCCTGGGGCCATCCACCCTGCCGCCGGCCAGCCAGAGCCTCCACACGCCTCACTCACC
GTACCAGAAGGTGGCCCGGCGCACAGGGGCACCCATCATCGTGTCCACCATGCTTGCACCAGAACCAAGT
ATCCGCCCCCAGATCATGAACGGCCCCCTGCACCCCCGCCCCCTGGTGGCGCTGCTGGACGGCCGCGACT
GCACTGTGGAGATGCCCATCCTGAAGGACCTGGCCACTGTGGCCTTCTGTGACGCGCAGTCGACGCAGGA
AATCCACGAGAAGGTTCTAAACGAAGCCGTGGGCGCCATGATGTACCACACCATCACCCTCACCAGGGAG
GACCTGGAGAAGTTCAAGGCCCTGAGAGTGATCGTGCGGATAGGCAGTGGCTATGACAACGTGGACATCA
AGGCTGCCGGCGAGCTCGGAATTGCCGTGTGCAACATCCCGTCTGCAGCCGTGGAAGAGACAGCGGACTC
TACCATCTGCCACATCCTCAACCTGTACCGGAGGAACACGTGGCTGTACCAGGCACTGCGGGAAGGCACG
CGGGTTCAGAGCGTGGAGCAGATCCGCGAGGTGGCCTCGGGAGCGGCCCGCATCCGTGGGGAGACGCTGG
GCCTCATTGGCTTTGGTCGCACGGGGCAGGCGGTTGCAGTTCGAGCCAAGGCCTTTGGATTCAGCGTCAT
ATTTTATGACCCCTACTTGCAGGATGGGATCGAGCGGTCCCTGGGCGTGCAGAGGGTCTACACCCTGCAG
GATTTGCTGTATCAGAGCGACTGCGTCTCCTTGCACTGCAATCTCAACGAACATAACCACCACCTCATCA
ATGACTTTACCATAAAGCAGATGAGGCAGGGAGCATTCCTTGTGAACGCAGCCCGTGGCGGCCTGGTGGA
CGAGAAAGCCTTAGCACAAGCCCTCAAGGAGGGCAGGATACGAGGGGCAGCCCTCGACGTGCATGAGTCA
GAGCCCTTCAGCTTTGCTCAGGGTCCGTTGAAAGATGCCCCGAATCTCATCTGCACTCCTCACACTGCCT
GGTACAGTGAGCAGGCGTCACTGGAGATGAGGGAGGCAGCTGCCACCGAGATCCGCCGAGCCATCACAGG
TCGCATCCCAGAAAGCTTAAGAAATTGTGTGAACAAGGAATTCTTTGTCACATCAGCGCCTTGGTCAGTA
ATAGACCAGCAAGCAATTCATCCTGAGCTCAATGGTGCCACATACAGATATCCGCCAGGCATCGTGGGTG
TGGCTCCAGGAGGACTTCCTGCAGCCATGGAAGGGATCATCCCTGGAGGCATCCCAGTGACTCACAACCT
CCCGACAGTGGCACATCCTTCCCAAGCGCCCTCTCCCAACCAGCCCACAAAACACGGGGACAATCGAGAG
CACCCCAACGAGCAATAG

Translation (985 aa):
MPVPSRHINIGRSQSWDAAGWYEGPWENAESLRPLGRRSSLTYGTAEGTWFEPNHRPQDAALPVAAEPYL
YREAVYNSVAARKGSTPDFTFYDSRQAVMSGRSPLLPREYYSDPSGAARVPKEPPLYRDPGVSRPVPSYG
VLGSRTSWDPMQGRSPALQDAGHLYRDPGGKMIPQGRQTQSRAASPGRYGREQPDTRYGAEVPAYPLSQV
FSDISERPIDPAPARQVAPTCLVVDPSSAAAPEGSTGVAPGALNRGYGPARESIPSKMAYETYEADLSTF
QGPGGKRTVLPEFLAFLRAEGLAEATLGALLQQGFDSPAVLATLEDADIKSVAPNLGQARVLSRLANSCR
TEMQLRRQDRGGPLPRARSSSFSHRSELLHGDLASLGAAAPLQTASPRAGDPARRPSSAPSQHLLETAAT
YSAPGVGTHAPHFPSNSGYSSPTPCALTARLSPTYPLQAGVALTNPGPSNPLHPGPRTAYSTAYTVPMEL
LKRERNVAASPLPSPHGSPQVLRKPGAPLGPSTLPPASQSLHTPHSPYQKVARRTGAPIIVSTMLAPEPS
IRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITLTRE
DLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGT
RVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQ
DLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHES
EPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKEFFVTSAPWSV
IDQQAIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHGDNRE
HPNEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH