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Report for CCDS74720.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74720.1 Public Homo sapiens 20 NCOA6 24 110 108 CCDS HistoryNCBI Gene:23054Re-query CCDS DB by CCDS ID:74720.1Re-query CCDS DB by GeneID:23054See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 74720.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000612493.4 ENSP00000481177.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612493.4Link to Ensembl Protein Viewer:ENSP00000481177.1Re-query CCDS DB by Nucleotide ID:ENST00000612493Re-query CCDS DB by Protein ID:ENSP00000481177
Original member Current member NCBI NM_001242539.2 NP_001229468.1 Accepted alive Link to Nucleotide Sequence:NM_001242539.2Link to Protein Sequence:NP_001229468.1Re-query CCDS DB by Nucleotide ID:NM_001242539Re-query CCDS DB by Protein ID:NP_001229468Link to BLAST:NP_001229468.1

Chromosomal Locations for CCDS 74720.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 34715322 34715365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34727259 34727407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34732559 34732595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34736690 34736758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34746807 34746928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34749403 34750519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34754722 34754868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34757220 34758104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34758805 34758933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34768464 34768586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34776293 34776448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34782121 34782355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3213 nt):
ATGGTTTTGGATGACCTTCCAAACTTAGAAGACATCTATACTTCCTTGTGTTCATCAACAATGGAAGACT
CAGAGATGGATTTTGACTCTGGACTAGAAGATGATGACACAAAAAGTGATAGTATTTTGGAGGATTCCAC
AATTTTTGTGGCCTTCAAAGGAAATATAGATGATAAAGACTTCAAATGGAAATTAGATGCAATATTGAAA
AACGTGCCCAATTTGTTACACATGGAGTCCAGCAAGCTAAAAGTACAGAAGGTGGAGCCCTGGAACAGCG
TGCGTGTGACATTCAACATCCCCCGGGAAGCAGCGGAGCGGCTACGGATCCTTGCTCAGAGCAACAACCA
GCAGCTTCGGGATTTAGGGATTCTCTCCGTTCAGATTGAAGGGGAAGGTGCTATTAACCTGGCTTTGGCT
CAGAACCGAAGCCAAGATGTGAGAATGAATGGACCCATGGGAGCTGGAAATTCAGTTAGGATGGAGGCGG
GATTTCCTATGGCAAGTGGTCCAGGAATAATAAGGATGAACAACCCTGCCACTGTTATGATACCCCCGGG
TGGAAATGTGTCATCTTCCATGATGGCACCAGGCCCCAATCCAGAGCTGCAGCCCAGGACTCCTCGCCCT
GCTTCTCAGTCAGATGCAATGGATCCACTCCTCTCTGGGCTCCATATACAGCAGCAAAGTCATCCCTCAG
GATCTTTAGCTCCCCCACATCACCCAATGCAGCCTGTCTCTGTGAACAGACAAATGAACCCAGCTAATTT
TCCCCAGCTGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAA
CAGCAGCAACAACAGTTGCAGGCAAGACCCCCACAGCAACATCAGCAGCAACAGCCACAGGGAATTCGAC
CCCAGTTTACTGCCCCAACTCAGGTGCCTGTTCCTCCAGGCTGGAACCAGCTGCCTTCTGGAGCCCTTCA
ACCTCCTCCAGCCCAGGGTTCTCTGGGCACAATGACTGCAAACCAAGGGTGGAAGAAGGCTCCCTTGCCC
GGCCCAATGCAACAGCAACTCCAGGCAAGACCATCCTTAGCCACGGTACAGACGCCTTCCCACCCTCCCC
CTCCATATCCCTTTGGCAGCCAGCAAGCCTCACAAGCCCACACAAACTTTCCTCAGATGAGCAACCCAGG
CCAGTTCACAGCTCCTCAGATGAAGAGTTTGCAGGGAGGGCCCTCTAGGGTCCCAACTCCCTTGCAGCAG
CCCCACCTCACCAACAAGTCTCCTGCCTCCTCACCCTCCTCCTTCCAGCAGGGATCCCCTGCATCCTCCC
CAACGGTTAACCAAACTCAGCAGCAGATGGGACCAAGGCCACCTCAAAATAACCCACTTCCCCAGGGATT
TCAGCAGCCTGTCAGCTCTCCGGGTCGGAATCCTATGGTTCAACAGGGAAATGTGCCACCTAACTTCATG
GTGATGCAGCAGCAACCACCAAACCAGGGGCCACAGAGTTTACATCCAGGCCTAGGAGGAATGCCTAAAC
GCCTCCCACCTGGCTTCTCAGCAGGACAGGCCAATCCGAACTTTATGCAAGGTCAGGTGCCTTCGACCAC
AGCAACCACCCCTGGGAATTCAGGAGCCCCTCAGCTGCAAGCAAATCAAAATGTCCAGCATGCAGGTGGT
CAAGGAGCTGGTCCTCCTCAAAACCAGATGCAGGTGTCCCACGGGCCGCCAAATATGATGCAGCCCAGCC
TCATGGGAATTCATGGCAACATGAACAATCAGCAGGCTGGTACTTCTGGGGTTCCTCAAGTGAACCTCAG
CAACATGCAAGGCCAGCCCCAGCAGGGCCCACCATCTCAGCTGATGGGCATGCACCAGCAAATCGTGCCC
TCCCAGGGCCAGATGGTCCAGCAACAAGGAACCTTGAACCCTCAGAACCCTATGATCCTTTCAAGGGCCC
AGCTTATGCCACAGGGCCAGATGATGGTGAACCCCCCGAGCCAAAATCTTGGGCCCTCGCCCCAAAGGAT
GACCCCACCCAAGCAGATGCTTTCCCAGCAGGGCCCACAAATGATGGCGCCACATAACCAGATGATGGGG
CCTCAGGGGCAGGTTTTGCTCCAACAGAACCCAATGATAGAGCAGATTATGACCAATCAAATGCAGGGGA
ATAAGCAGCAGTTTAACACTCAGAACCAGTCCAATGTCATGCCGGGACCAGCCCAGATAATGAGGGGACC
AACTCCAAACATGCAAGGAAATATGGTGCAGTTTACGGGACAGATGTCAGGACAGATGCTGCCCCAGCAA
GGGCCTGTGAACAACAGTCCATCTCAGGTTATGGGCATTCAGGGACAGGTCCTGCGGCCACCAGGGCCCA
GCCCACACATGGCCCAGCAGCATGGTGATCCTGCTACTACAGCAAATAACGATGTCAGTTTATCTCAGAT
GATGCCTGATGTTAGCATTCAACAAACCAACATGGTCCCCCCTCATGTGCAGGCCATGCAGGGAAACAGT
GCCTCGGGAAACCACTTCTCAGGCCATGGGATGTCTTTCAATGCACCTTTCAGTGGAGCTCCCAATGGAA
ATCAGATGTCCTGTGGTCAAAATCCAGGCTTCCCAGTCAATAAGGATGTCACGCTAACGAGCCCATTGTT
GGTCAACTTATTGCAGAGTGACATATCTGCAGGCCATTTTGGGGTAAACAATAAGCAAAATAATACCAAC
GCAAATAAACCGAAGAAGAAGAAACCCCCTCGGAAGAAGAAAAATAGTCAGCAAGATCTAAACACCCCAG
ATACTCGCCCAGCTGGTCTGGAAGAGGCTGATCAGCCACCGTTGCCTGGAGAACAAGGAATTAACTTGGA
TAACTCAGGCCCTAAACTGCCAGAATTTTCAAACCGGCCACCAGCCCCGTCGCAGAATTTAGTCTCAAAG
GAAACTTCAACCACAGCACTGCAGGCCTCTGTTGCCAGACCAGAGCTGGAGGTAAATGCTGCCATAGTCT
CTGGACAAAGCAGTGAGCCCAAAGAGATAGTTGAAAAGTCCAAAATCCCAGGCCGAAGAAACTCCCGAAC
TGAAGAGCCAACTGTGGCCTCTGAAAGTGTGGAAAATGGACATCGTAAACGATCTTCTCGACCTGCTTCA
GCCTCCAGCTCTACTAAAGACATAACCAGTGCGGTGCAATCCAAGCGAAGAAAATCCAAGTAA

Translation (1070 aa):
MVLDDLPNLEDIYTSLCSSTMEDSEMDFDSGLEDDDTKSDSILEDSTIFVAFKGNIDDKDFKWKLDAILK
NVPNLLHMESSKLKVQKVEPWNSVRVTFNIPREAAERLRILAQSNNQQLRDLGILSVQIEGEGAINLALA
QNRSQDVRMNGPMGAGNSVRMEAGFPMASGPGIIRMNNPATVMIPPGGNVSSSMMAPGPNPELQPRTPRP
ASQSDAMDPLLSGLHIQQQSHPSGSLAPPHHPMQPVSVNRQMNPANFPQLQQQQQQQQQQQQQQQQQQQQ
QQQQQLQARPPQQHQQQQPQGIRPQFTAPTQVPVPPGWNQLPSGALQPPPAQGSLGTMTANQGWKKAPLP
GPMQQQLQARPSLATVQTPSHPPPPYPFGSQQASQAHTNFPQMSNPGQFTAPQMKSLQGGPSRVPTPLQQ
PHLTNKSPASSPSSFQQGSPASSPTVNQTQQQMGPRPPQNNPLPQGFQQPVSSPGRNPMVQQGNVPPNFM
VMQQQPPNQGPQSLHPGLGGMPKRLPPGFSAGQANPNFMQGQVPSTTATTPGNSGAPQLQANQNVQHAGG
QGAGPPQNQMQVSHGPPNMMQPSLMGIHGNMNNQQAGTSGVPQVNLSNMQGQPQQGPPSQLMGMHQQIVP
SQGQMVQQQGTLNPQNPMILSRAQLMPQGQMMVNPPSQNLGPSPQRMTPPKQMLSQQGPQMMAPHNQMMG
PQGQVLLQQNPMIEQIMTNQMQGNKQQFNTQNQSNVMPGPAQIMRGPTPNMQGNMVQFTGQMSGQMLPQQ
GPVNNSPSQVMGIQGQVLRPPGPSPHMAQQHGDPATTANNDVSLSQMMPDVSIQQTNMVPPHVQAMQGNS
ASGNHFSGHGMSFNAPFSGAPNGNQMSCGQNPGFPVNKDVTLTSPLLVNLLQSDISAGHFGVNNKQNNTN
ANKPKKKKPPRKKKNSQQDLNTPDTRPAGLEEADQPPLPGEQGINLDNSGPKLPEFSNRPPAPSQNLVSK
ETSTTALQASVARPELEVNAAIVSGQSSEPKEIVEKSKIPGRRNSRTEEPTVASESVENGHRKRSSRPAS
ASSSTKDITSAVQSKRRKSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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