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Report for CCDS73052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73052.1 Public Homo sapiens 1 TBCE 24 110 108 CCDS HistoryNCBI Gene:6905Re-query CCDS DB by CCDS ID:73052.1Re-query CCDS DB by GeneID:6905See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73052.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000543662.4 ENSP00000439170.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543662.4Link to Ensembl Protein Viewer:ENSP00000439170.1Re-query CCDS DB by Nucleotide ID:ENST00000543662Re-query CCDS DB by Protein ID:ENSP00000439170
Original member Current member NCBI NM_001287801.2 NP_001274730.1 Accepted alive Link to Nucleotide Sequence:NM_001287801.2Link to Protein Sequence:NP_001274730.1Re-query CCDS DB by Nucleotide ID:NM_001287801Re-query CCDS DB by Protein ID:NP_001274730Link to BLAST:NP_001274730.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001274730.1 578 Q15813-2 578 100% 0 0

Chromosomal Locations for CCDS 73052.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 235380050 235380149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235401503 235401587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235414433 235414618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235419473 235419561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235427140 235427239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235430705 235430804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235432946 235433098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235434204 235434280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235435745 235435840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235436386 235436450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235436544 235436608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235437322 235437474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235438769 235438922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235441814 235441882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235442852 235442911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235448349 235448440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235448670 235448762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGAGTGACACTTTGACAGCGGATGTCATTGGTCGAAGAGTTGAAGTTAATGGAGAACATGCAACAGTAC
GTTTTGCTGGTGTTGTCCCTCCCGTGGCAGGACCCTGGTTAGGAGTAGAATGGGACAATCCCGAGAGAGG
AAAGCATGATGGGAGCCACGAAGGGACTGTGTATTTTAAATGCAGGCACCCGACAGGAGGATCCTTTATT
CGTCCGAACAAGGTAAATTTTGGAACAGACTTTCTTACTGCAATTAAGAACCGCTATGTGTTAGAAGATG
GACCAGAGGAAGATAGAAAAGAGCAAATTGTTACAATTGGAAATAAACCTGTGGAGACTATCGGTTTTGA
CTCTATTATGAAACAGCAAAGTCAGCTGAGCAAGTTGCAAGAAGTTTCTCTGAGGAACTGTGCAGTAAGT
TGTGCTGGTGAAAAAGGAGGAGTTGCTGAAGCATGTCCTAATATCAGAAAGGTAGATTTGTCAAAAAACC
TGTTGTCATCATGGGATGAAGTGATACACATTGCTGATCAGCTCAGACACCTGGAAGTCCTTAATGTCAG
TGAAAATAAACTAAAATTTCCCTCCGGTTCAGTATTAACTGGAACGCTTTCTGTACTGAAGGTTTTAGTC
CTCAATCAAACAGGAATAACGTGGGCTGAGGCTCATGCGCAGTGTGGTGGCAGCAGGCACGGTCTCGACA
TGCAGAAAGACGCCAGCAAGTTCGTGGATCTGTGCGTGCTGCAGAAATGCTCCACCAGCAACTGCATCAT
CAGTGCCAAGGACCACACATCCATGCGGATGAACGTGGCCAAGGTGCTGCGGTGTGTCGCGGGGTGCCCA
GGCCTGGAGGAACTCTACCTTGAGTCTAACAACATTTTCATTTCCGAAAGGCCAACAGATGTTCTCCAGA
CAGTCAAGTTATTAGATCTTTCCTCTAATCAATTAATTGATGAAAATCAGCTGTATCTGATAGCCCACCT
GCCCAGGTTAGAACAATTAATCCTCTCTGACACTGGAATTTCTTCTCTACATTTTCCGGATGCTGGAATT
GGGTGCAAAACGTCCATGTTCCCATCCTTGAAGTACCTGGTAGTAAACGACAATCAGATATCACAATGGT
CGTTTTTCAATGAGCTAGAGAAGTTACCAAGTCTACGGGCTTTGTCCTGCCTAAGAAACCCCCTGACCAA
AGAGGACAAAGAAGCAGAGACGGCGCGACTACTCATTATCGCCAGCATTGGCCAGCTGAAGACGCTGAAC
AAATGTGAGATTCTCCCCGAGGAGAGGCGGAGAGCTGAGCTTGACTACCGAAAAGCTTTTGGAAATGAGT
GGAAACAGGCTGGTGGACATAAGGATCCGGAAAAAAACAGACTCAGCGAAGAATTCCTCACAGCCCATCC
CAGATACCAGTTCCTCTGCCTGAAATATGGTGCACCTGAAGATTGGGAACTCAAAACACAGCAACCACTT
ATGCTGAAAAACCAGCTACTAACACTGAAGATAAAATACCCTCATCAACTTGATCAGAAAGTCCTGGAGA
AACAACTGCCGGGCTCCATGACAATTCAAAAGGTGAAGGGATTGCTGTCACGTCTTCTCAAAGTTCCTGT
GTCAGACCTTCTGTTGTCCTATGAAAGTCCCAAAAAGCCGGGCAGAGAAATCGAGCTGGAAAATGACCTA
AAGTCATTACAGTTTTATTCTGTGGAAAATGGAGATTGTCTATTAGTGCGATGGTGA

Translation (578 aa):
MSDTLTADVIGRRVEVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGSFI
RPNKVNFGTDFLTAIKNRYVLEDGPEEDRKEQIVTIGNKPVETIGFDSIMKQQSQLSKLQEVSLRNCAVS
CAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRHLEVLNVSENKLKFPSGSVLTGTLSVLKVLV
LNQTGITWAEAHAQCGGSRHGLDMQKDASKFVDLCVLQKCSTSNCIISAKDHTSMRMNVAKVLRCVAGCP
GLEELYLESNNIFISERPTDVLQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTGISSLHFPDAGI
GCKTSMFPSLKYLVVNDNQISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIASIGQLKTLN
KCEILPEERRRAELDYRKAFGNEWKQAGGHKDPEKNRLSEEFLTAHPRYQFLCLKYGAPEDWELKTQQPL
MLKNQLLTLKIKYPHQLDQKVLEKQLPGSMTIQKVKGLLSRLLKVPVSDLLLSYESPKKPGREIELENDL
KSLQFYSVENGDCLLVRW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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