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Report for CCDS6781.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6781.3 Public Homo sapiens 9 SHOC1 24 110 108 CCDS HistoryNCBI Gene:158401Re-query CCDS DB by CCDS ID:6781.3Re-query CCDS DB by GeneID:158401See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6781.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318737.8 ENSP00000322108.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000318737.8Link to Ensembl Protein Viewer:ENSP00000322108.4Re-query CCDS DB by Nucleotide ID:ENST00000318737Re-query CCDS DB by Protein ID:ENSP00000322108
Original member Current member EBI ENST00000374287.7 ENSP00000363405.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374287.7Link to Ensembl Protein Viewer:ENSP00000363405.3Re-query CCDS DB by Nucleotide ID:ENST00000374287Re-query CCDS DB by Protein ID:ENSP00000363405
Original member Current member NCBI NM_173521.5 NP_775792.5 Accepted alive Link to Nucleotide Sequence:NM_173521.5Link to Protein Sequence:NP_775792.5Re-query CCDS DB by Nucleotide ID:NM_173521Re-query CCDS DB by Protein ID:NP_775792Link to BLAST:NP_775792.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775792.5 1444 Q5VXU9-1 1444 100% 0 0

Chromosomal Locations for CCDS 6781.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 111686770 111686870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111691551 111692511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111693799 111693948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111694231 111694362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111699954 111700047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111702105 111702226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111703881 111703992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111705247 111705364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111706568 111706746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111707855 111707924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111713100 111713172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111714445 111714623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111718184 111718288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111722409 111722585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111723792 111723911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111727633 111728049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111738280 111738522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111741476 111741570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111746234 111746342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111748092 111748199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111756325 111756478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111758084 111758195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111758695 111758848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111775791 111775975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111780930 111780994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4335 nt):
ATGACAGATACCTCAGTCTTGGACCAATGGAAAGCAAGTTTCTTTGTGGAGGATTTCCTTGAGAAAAAAA
CAATTACAAGAATGGTGACCCAGATTAATTGTGAATTTGAGGAAGTTGTTCCAAGTTCAAATCCAGACTC
CCAAATTGAAGTAGAGGAGGTCAGTTTATACACCCACATGGACTACAATGAAGTCTTTACCCCTGTCAGT
TGTTTAGAAAAATGTTCAGCACTTCAAAACCAGAACCAAGATTTATTTATTGATGATAAAGGAATACTTT
TTGTAAGTAGTAGAAAACACCTACCAACTTTGCCTACTCTCTTGAGTAGACTAAAACTGTTTTTGGTAAA
GGATCCTCTTTTAGATTTCAAAGGACAGATCTTCACAGAAGCTAATTTTTCCAGGGAATGTTTCTCTCTT
CAAGAAACTTTGGAAGCTTTTGTGAAAGAAGATTTTTGTATGGATAAAGTGAACTTTTGTCAAGAGAAAC
TAGAAGATACAATATGTTTAAATGAGCCGTCAAGTTTTCTTATTGAGTATGAATTCTTAATACCTCCAAG
CCTCAAACCAGAAATTGATATTCCATCACTCTCAGAACTGAAGGAGTTATTAAACCCAGTGCCAGAAATA
ATAAACTATGTAGATGAAAAGGAAAAGCTTTTTGAAAGAGATCTTACTAACAAGCATGGAATTGAGGATA
TCGGGGATATAAAATTCAGCTCCACAGAGATTTTGACCATTCAAAGCCAGAGTGAACCAGAAGAGTGCAG
TAAACCAGGAGAGTTAGAAATGCCACTAACTCCTCTATTCCTAACATGCCAACATTCTTCAGTGAATTCA
TTACGTACAGAACTTCAGACATTTCCATTATCTCCGGTTTGTAAAATTAATTTGCTTACTGCTGAAGAAT
CAGCTAATGAATACTACATGATGTGGCAATTAGAAAGATGTAGAAGCCCTTTGAACCCATTTTTGCTTAC
AGTGCCAAGAATTCAAGAGCCCCACAGCCAATATTCAGTTACAGATTTGAAAAAGATATTTTCTGTTAAA
GAAGAAAGCCTTGTGATTAATCTGGAAAAGGCAGAGTGGTGGAAACAAGCAGGACTAAATCTGAAAATGA
TGGAAACATTGGAACATCTGAATACATATTTATGTCATGATAATTTGTCTTCTAATGACACTAAAATTGA
GATATTTTTGCCTACGAAAGTGCTTCAATTAGAATCATGTCTAGAACATAAAAGTCATTCTTCACCTATT
GCACTTATTGATGAAAAATCTACAAATGCTCATTTATCACTTCCACAAAAGAGTCCATCTCTGGCAAAAG
AAGTACCAGATCTATGTTTTTCTGATGACTATTTCTCTGATAAAGGAGCAGCAAAAGAAGAAAAACCAAA
GAATGACCAAGAACCAGTAAACAGAATAATCCAAAAGAAAGAAAATAACGATCACTTTGAACTTGACTGC
ACAGGACCATCTATTAAATCACCTTCCTCTTCAATAATTAAAAAAGCATCTTTTGAACATGGCAAAAAAC
AAGAGAATGATTTGGACCTTTTGAGCGACTTTATTATGCTGCGAAATAAATATAAGACTTGCACCTCAAA
GACTGAAGTCACAAACAGTGATGAAAAACATGATAAAGAAGCATGTTCTTTGACACTTCAAGAAGAAAGT
CCTATTGTTCATATTAATAAAACCCTGGAGGAAATAAATCAGGAAAGGGGAACAGATAGTGTCATTGAAA
TTCAAGCGTCAGATAGCCAGTGCCAAGCATTTTGCCTCCTCGAAGCAGCAGCTTCTCCTATCTTAAAAAA
CCTTGTATCCTTGTGTACCCTCCCTACTGCTAATTGGAAATTTGCCACTGTTATTTTTGACCAAACAAGG
TTTCTCTTAAAGGAACAAGAAAAAGTAGTAAGTGATGCTGTTCGCCAAGGTACAATTGATGAAAGAGAAA
TGACTTTCAAGCATGCCGCTCTCTTACATCTTCTGGTAACAATTAGAGATGTCCTTTTAACATGCAGCTT
GGACACAGCATTGGGATATTTGTCGAAGGCAAAAGATATCTACAACAGCATTTTAGGCCCCTATTTGGGT
GACATTTGGAGACAGCTGGAGATTGTACAGTTTATTAGGGGGAAAAAGCCTGAAACCAACTACAAGATAC
AAGAATTGCAATGTCAGATACTAAGTTGGATGCAAAGTCAACAGCAAATTAAGGTACTGATTATAATAAG
AATGGACTCAGACGGTGAAAAACATTTTCTCATTAAAATTCTTAACAAAATAGAAGGTTTAACACTGACT
GTCCTTCATTCAAATGAAAGAAAAGATTTTCTGGAATCTGAAGGTGTTTTAAGGGGTACAAGTTCCTGTG
TAGTTGTACATAATCAATATATTGGAGCAGATTTCCCCTGGAGTAATTTCTCATTTGTGGTGGAATACAA
TTATGTGGAAGACTCTTGTTGGACTAAACACTGCAAAGAGTTGAATATTCCTTACATGGCCTTTAAAGTG
ATTCTTCCAGACACAGTTTTAGAAAGAAGCACCTTGCTGGATAGATTTGGAGGTTTTCTTTTGGAAATTC
AGATTCCATATGTGTTTTTTGCATCTGAAGGACTTCTTAATACTCCAGACATACTTCAGCTGCTAGAATC
CAACTATAACATCTCACTAGTAGAGAGAGGCTGCAGTGAGTCATTGAAACTCTTTGGAAGTTCAGAGTGT
TATGTAGTGGTGACAATTGATGAACACACTGCCATAATTTTGCAGGATCTAGAAGAATTGAATTATGAGA
AGGCATCAGACAATATCATTATGAGGCTGATGGCATTATCATTACAGTACAGATATTGTTGGATAATTTT
ATATACCAAAGAAACATTAAATTCAGAGTATCTGCTTACAGAAAAGACACTTCATCACCTAGCACTGATT
TATGCAGCTTTGGTTTCATTTGGGCTAAACTCTGAAGAACTGGATGTAAAGCTTATAATTGCCCCAGGAG
TAGAAGCAACTGCCTTGATAATTCGACAAATTGCTGACCACAGTTTAATGACCTCAAAGAGAGATCCTCA
TGAATGGTTGGATAAATCCTGGCTTAAAGTTTCACCATCTGAGGAAGAAATGTACTTACTTGATTTTCCA
TGTATTAACCCATTGGTGGCTCAGCTCATGCTAAATAAAGGACCTTCACTGCATTGGATATTATTAGCAA
CTCTGTGTCAACTTCAGGAACTCCTACCTGAAGTCCCAGAAAAAGTGTTAAAGCATTTTTGTAGCATCAC
TTCCCTATTCAAGATTGGTTCTTCTTCCATAACAAAATCACCGCAAATTTCGTCACCTCAGGAAAATAGG
AATCAGATTAGTACCTTGTCTTCTCAAAGTTCAGCTTCTGATTTAGACTCTGTCATTCAAGAACATAATG
AATATTATCAGTATTTAGGATTAGGAGAGACAGTGCAGGAAGACAAAACCACCATTTTGAATGACAACTC
TTCCATTATGGAACTAAAAGAAATCTCAAGTTTTTTACCACCTGTGACTTCATACAATCAGACCAGCTAC
TGGAAAGACTCCAGCTGTAAATCTAATATAGGGCAGAATACTCCTTTTCTAATTAATATAGAATCAAGGA
GACCGGCTTATAACTCCTTTCTAAACCACAGTGATTCAGAGTCAGATGTCTTTTCTTTGGGTCTAACACA
AATGAACTGTGAAACTATAAAATCACCAACTGACACTCAGAAGAGAGTGTCAGTTGTCCCCCGTTTTATA
AATTCTCAGAAAAGGAGAACACATGAAGCAAAAGGTTTCATAAATAAAGATGTATCGGACCCTATCTTTT
CACTAGAGGGCACTCAATCTCCTCTTCATTGGAACTTTAAGAAAAATATATGGGAACAAGAGAATCACCC
GTTCAACTTACAATATGGTGCACAGCAGACTGCATGTAACAAATTGTACTCTCAGAAAGGTAATTTATTC
ACTGATCAGCAAAAATGTCTATCAGATGAGTCTGAAGGCCTCACATGTGAAAGTTCAAAAGATGAGACTT
TCTGGAGAGAATTACCATCTGTCCCCAGTTTGGATTTATTTCGTGCTTCTGATTCTAATGCAAATCAAAA
AGAATTCAACAGCCTTTATTTCTACCAAAGAGCTGGAAAAAGTTTAGGACAGAAAAGGCACCATGAATCT
TCATTTAACTCAGGAGACAAGGAATCATTAACAGGTTTTATGTGCTCACAACTACCACAATTCAAAAAAC
GACGTCTAGCATATGAAAAAGTCCCTGGTAGAGTTGATGGGCAGACTCGGCTGAGGTTTTTTTGA

Translation (1444 aa):
MTDTSVLDQWKASFFVEDFLEKKTITRMVTQINCEFEEVVPSSNPDSQIEVEEVSLYTHMDYNEVFTPVS
CLEKCSALQNQNQDLFIDDKGILFVSSRKHLPTLPTLLSRLKLFLVKDPLLDFKGQIFTEANFSRECFSL
QETLEAFVKEDFCMDKVNFCQEKLEDTICLNEPSSFLIEYEFLIPPSLKPEIDIPSLSELKELLNPVPEI
INYVDEKEKLFERDLTNKHGIEDIGDIKFSSTEILTIQSQSEPEECSKPGELEMPLTPLFLTCQHSSVNS
LRTELQTFPLSPVCKINLLTAEESANEYYMMWQLERCRSPLNPFLLTVPRIQEPHSQYSVTDLKKIFSVK
EESLVINLEKAEWWKQAGLNLKMMETLEHLNTYLCHDNLSSNDTKIEIFLPTKVLQLESCLEHKSHSSPI
ALIDEKSTNAHLSLPQKSPSLAKEVPDLCFSDDYFSDKGAAKEEKPKNDQEPVNRIIQKKENNDHFELDC
TGPSIKSPSSSIIKKASFEHGKKQENDLDLLSDFIMLRNKYKTCTSKTEVTNSDEKHDKEACSLTLQEES
PIVHINKTLEEINQERGTDSVIEIQASDSQCQAFCLLEAAASPILKNLVSLCTLPTANWKFATVIFDQTR
FLLKEQEKVVSDAVRQGTIDEREMTFKHAALLHLLVTIRDVLLTCSLDTALGYLSKAKDIYNSILGPYLG
DIWRQLEIVQFIRGKKPETNYKIQELQCQILSWMQSQQQIKVLIIIRMDSDGEKHFLIKILNKIEGLTLT
VLHSNERKDFLESEGVLRGTSSCVVVHNQYIGADFPWSNFSFVVEYNYVEDSCWTKHCKELNIPYMAFKV
ILPDTVLERSTLLDRFGGFLLEIQIPYVFFASEGLLNTPDILQLLESNYNISLVERGCSESLKLFGSSEC
YVVVTIDEHTAIILQDLEELNYEKASDNIIMRLMALSLQYRYCWIILYTKETLNSEYLLTEKTLHHLALI
YAALVSFGLNSEELDVKLIIAPGVEATALIIRQIADHSLMTSKRDPHEWLDKSWLKVSPSEEEMYLLDFP
CINPLVAQLMLNKGPSLHWILLATLCQLQELLPEVPEKVLKHFCSITSLFKIGSSSITKSPQISSPQENR
NQISTLSSQSSASDLDSVIQEHNEYYQYLGLGETVQEDKTTILNDNSSIMELKEISSFLPPVTSYNQTSY
WKDSSCKSNIGQNTPFLINIESRRPAYNSFLNHSDSESDVFSLGLTQMNCETIKSPTDTQKRVSVVPRFI
NSQKRRTHEAKGFINKDVSDPIFSLEGTQSPLHWNFKKNIWEQENHPFNLQYGAQQTACNKLYSQKGNLF
TDQQKCLSDESEGLTCESSKDETFWRELPSVPSLDLFRASDSNANQKEFNSLYFYQRAGKSLGQKRHHES
SFNSGDKESLTGFMCSQLPQFKKRRLAYEKVPGRVDGQTRLRFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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