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Report for CCDS62857.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62857.1 Public Homo sapiens 2 SLC66A3 24 110 108 CCDS HistoryNCBI Gene:130814Re-query CCDS DB by CCDS ID:62857.1Re-query CCDS DB by GeneID:130814See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 62857.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000402361.5 ENSP00000384129.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402361.5Link to Ensembl Protein Viewer:ENSP00000384129.1Re-query CCDS DB by Nucleotide ID:ENST00000402361Re-query CCDS DB by Protein ID:ENSP00000384129
Original member Current member NCBI NM_001282711.2 NP_001269640.1 Accepted alive Link to Nucleotide Sequence:NM_001282711.2Link to Protein Sequence:NP_001269640.1Re-query CCDS DB by Nucleotide ID:NM_001282711Re-query CCDS DB by Protein ID:NP_001269640Link to BLAST:NP_001269640.1

Chromosomal Locations for CCDS 62857.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 11155547 11155689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11160466 11160548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11160625 11160694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11164204 11164261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11174968 11174976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (363 nt):
ATGGAGGCGGCGCTGCTGGGGCTGTGTAACTGGAGCACGCTGGGCGTGTGCGCCGCGCTGAAGCTGCCGC
AGATCTCCGCTGTGCTAGCGGCGCGCAGCGCGCGGGGCCTCAGCCTTCCGAGTTTACTTCTGGAGCTGGC
AGGATTCCTGGTGTTTCTGCGGTACCAGTGTTACTATGGGTATCCGCCGCTGACCTACCTGGAGTACCCC
ATCCTCATCGCGCAAGATGTCATCCTCCTGCTCTGTATCTTTCATTTTAACGGGAACGTGAAGCAGGCCA
CTCCTTACATCGCTGTATTGGTGTCTTCTTGGTTCATCCTTGCCCTGCAGAAGTGGATCATAGACCTGGC
CATGCAAGAATAA

Translation (120 aa):
MEAALLGLCNWSTLGVCAALKLPQISAVLAARSARGLSLPSLLLELAGFLVFLRYQCYYGYPPLTYLEYP
ILIAQDVILLLCIFHFNGNVKQATPYIAVLVSSWFILALQKWIIDLAMQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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