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Report for CCDS62392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62392.1 Public Homo sapiens 18 LDLRAD4 24 110 108 CCDS HistoryNCBI Gene:753Re-query CCDS DB by CCDS ID:62392.1Re-query CCDS DB by GeneID:753See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 62392.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000585931.5 ENSP00000466772.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000585931.5Link to Ensembl Protein Viewer:ENSP00000466772.1Re-query CCDS DB by Nucleotide ID:ENST00000585931Re-query CCDS DB by Protein ID:ENSP00000466772
Original member Current member EBI ENST00000677910.1 ENSP00000503996.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677910.1Link to Ensembl Protein Viewer:ENSP00000503996.1Re-query CCDS DB by Nucleotide ID:ENST00000677910Re-query CCDS DB by Protein ID:ENSP00000503996
Original member Current member EBI ENST00000677744.1 ENSP00000504022.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677744.1Link to Ensembl Protein Viewer:ENSP00000504022.1Re-query CCDS DB by Nucleotide ID:ENST00000677744Re-query CCDS DB by Protein ID:ENSP00000504022
Original member Current member NCBI NM_001276249.1 NP_001263178.1 Accepted alive Link to Nucleotide Sequence:NM_001276249.1Link to Protein Sequence:NP_001263178.1Re-query CCDS DB by Nucleotide ID:NM_001276249Re-query CCDS DB by Protein ID:NP_001263178Link to BLAST:NP_001263178.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263178.1 229 O15165-5 229 100% 0 0

Chromosomal Locations for CCDS 62392.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 13621167 13621271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13643359 13643412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13645127 13645657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGGTGGTGGTCATCGTCTGCCTGCTGAACCACTACAAAGTCTCCACGCGGTCCTTCATCAACCGCCCGA
ACCAGAGCCGGAGGCGGGAGGACGGGCTGCCGCAGGAAGGGTGCCTGTGGCCTTCAGACAGCGCCGCACC
GCGGCTGGGCGCCTCGGAGATCATGCATGCCCCGCGGTCCAGGGACAGGTTCACAGCGCCGTCCTTCATC
CAGAGGGATCGCTTCAGCCGCTTCCAGCCCACCTACCCCTATGTGCAGCACGAGATTGATCTTCCTCCCA
CCATCTCCCTGTCCGACGGTGAAGAGCCACCTCCTTACCAGGGGCCCTGCACCCTGCAGCTCCGGGACCC
TGAACAGCAGATGGAACTCAACCGAGAGTCCGTGAGGGCCCCACCCAACCGAACCATATTTGACAGTGAT
TTAATAGACATTGCTATGTATAGCGGGGGTCCATGCCCACCCAGCAGCAACTCGGGCATCAGTGCAAGCA
CCTGCAGCAGTAACGGGAGGATGGAGGGGCCACCCCCCACATACAGCGAGGTGATGGGCCACCACCCAGG
CGCCTCTTTCCTCCATCACCAGCGCAGCAACGCACACAGGGGCAGCAGACTGCAGTTTCAGCAGAACAAT
GCAGAGAGCACAATAGTACCCATCAAAGGCAAAGATAGGAAGCCTGGGAACCTGGTCTGA

Translation (229 aa):
MVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQEGCLWPSDSAAPRLGASEIMHAPRSRDRFTAPSFI
QRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSD
LIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSRLQFQQNN
AESTIVPIKGKDRKPGNLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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