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Report for CCDS61404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61404.1 Public Homo sapiens 14 EFS 24 110 108 CCDS HistoryNCBI Gene:10278Re-query CCDS DB by CCDS ID:61404.1Re-query CCDS DB by GeneID:10278See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 61404.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000429593.6 ENSP00000416684.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429593.6Link to Ensembl Protein Viewer:ENSP00000416684.2Re-query CCDS DB by Nucleotide ID:ENST00000429593Re-query CCDS DB by Protein ID:ENSP00000416684
Original member Current member NCBI NM_001277174.2 NP_001264103.1 Accepted alive Link to Nucleotide Sequence:NM_001277174.2Link to Protein Sequence:NP_001264103.1Re-query CCDS DB by Nucleotide ID:NM_001277174Re-query CCDS DB by Protein ID:NP_001264103Link to BLAST:NP_001264103.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264103.1 392 O43281-3 392 100% 0 0

Chromosomal Locations for CCDS 61404.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 23357226 23357660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23358876 23358965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23359317 23359694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23359923 23360039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23360141 23360281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23365008 23365025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGGCCATTGCCACGTCGGTGTATGTGGTGCCGCCCCCAGCTCGGCCCTGTCCAACCTCAGGACCTCCAG
CTGGACCTTGCCCACCCTCTCCTGACCTCATCTACAAAATCCCCAGAGCTAGTGGGACCCAGCTGGCTGC
TCCCAGAGATGCCTTGGAGGTCTACGATGTGCCCCCCACCGCCCTCCGGGTGCCCTCCAGTGGCCCCTAT
GACTGCCCTGCCTCCTTTTCCCACCCTCTGACCCGGGTTGCCCCGCAGCCCCCTGGAGAGGATGATGCTC
CCCCTTCTCCAGAGCCCCCTGGAGCCTTGGCCTCCCATGACCAGGACACCCTGGCCCAGCTTCTGGCCAG
AAGCCCCCCACCCCCACACAGGCCCCGGCTCCCCTCAGCTGAGAGCCTGTCCCGCCGCCCTCTGCCTGCC
CTGCCTGTCCCTGAGGCCCCCAGCCCCTCCCCAGTGCCCTCTCCTGCCCCAGGCCGGAAGGGCAGCATCC
AGGACCGGCCTCTGCCCCCACCCCCACCCCGCCTGCCTGGTTATGGAGGCCCCAAGGTCGAGGGGGATCC
AGAGGGCAGGGAGATGGAGGATGACCCAGCAGGACACCACAATGAGTACGAGGGCATTCCGATGGCCGAG
GAGTATGACTATGTCCACCTGAAGGGCATGGACAAAGCTCAGGGATCTAGGCCCCCGGATCAGGCCTGCA
CAGGGGATCCTGAACTGCCCGAGAGGGGGATGCCGGCGCCGCAGGAGGCCCTGTCCCCAGGGGAGCCACT
GGTTGTGTCCACCGGAGATCTGCAGCTCCTGTACTTCTATGCTGGGCAATGCCAGAGCCACTACTCAGCC
CTGCAGGCAGCCGTGGCAGCCCTGATGTCCAGTACCCAGGCTAATCAGCCCCCGCGCCTTTTCGTGCCCC
ACAGCAAGAGGGTGGTGGTGGCTGCTCATCGCCTGGTGTTTGTTGGGGACACCCTGGGCCGGCTGGCAGC
CTCTGCCCCTCTGAGAGCACAGGTCAGGGCTGCAGGTACAGCACTGGGCCAGGCATTGCGGGCCACTGTG
CTGGCTGTCAAGGGAGCTGCCCTGGGCTACCCATCCAGCCCTGCCATCCAAGAGATGGTGCAGTGTGTAA
CAGAACTGGCAGGGCAGGCCCTGCAATTCACTACCCTGCTCACTAGCCTGGCTCCATGA

Translation (392 aa):
MAIATSVYVVPPPARPCPTSGPPAGPCPPSPDLIYKIPRASGTQLAAPRDALEVYDVPPTALRVPSSGPY
DCPASFSHPLTRVAPQPPGEDDAPPSPEPPGALASHDQDTLAQLLARSPPPPHRPRLPSAESLSRRPLPA
LPVPEAPSPSPVPSPAPGRKGSIQDRPLPPPPPRLPGYGGPKVEGDPEGREMEDDPAGHHNEYEGIPMAE
EYDYVHLKGMDKAQGSRPPDQACTGDPELPERGMPAPQEALSPGEPLVVSTGDLQLLYFYAGQCQSHYSA
LQAAVAALMSSTQANQPPRLFVPHSKRVVVAAHRLVFVGDTLGRLAASAPLRAQVRAAGTALGQALRATV
LAVKGAALGYPSSPAIQEMVQCVTELAGQALQFTTLLTSLAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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