CCDS Report for Consensus CDS

PubMed

Entrez

Gene

BLAST

OMIM

The CCDS database will be unavailable on Tuesday, June 4, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Genome Displays

	Ensembl
	NCBI
	UCSC
	VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS58005.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
58005.1	Public	Homo sapiens	1	DNAJC6	24	110	108

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 58005.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000263441.11	ENSP00000263441.7		Accepted	alive
		NCBI	NM_001256865.2	NP_001243794.1		Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001243794.1	900	O75061-4	900	100%	0	0

Chromosomal Locations for CCDS 58005.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)

Genome Browser links:

Chromosome	Start	Stop
1	65364652	65364785
1	65365885	65365934
1	65366048	65366196
1	65379402	65379524
1	65384193	65384326
1	65385712	65385906
1	65386812	65386929
1	65388336	65388415
1	65389256	65389449
1	65389547	65389627
1	65392431	65392865
1	65394898	65395032
1	65398813	65398881
1	65401761	65401880
1	65405870	65406133
1	65408641	65408783
1	65411250	65411426
1	65412924	65413025

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2703 nt):
ATGGAGCCCAGCTATGGGGGAGGTCTCTTTGACATGGTAAAAGGAGGTGCAGGGAGGCTCTTTAGTAACC TAAAGGACAACTTGAAAGACACCCTCAAAGACACATCTTCTAGAGTGATACAATCTGTGACCAGCTACAC AAAGGGAGATTTAGACTTCACTTATGTTACCTCCAGAATTATTGTGATGTCCTTTCCTCTGGACAATGTT GACATAGGATTCAGGAATCAGGTTGATGACATTCGAAGCTTTTTGGATTCCAGACATCTTGACCACTACA CAGTATACAATCTGTCACCTAAGTCTTATCGAACTGCCAAGTTTCACAGCCGGGTCTCAGAATGCAGTTG GCCCATTAGGCAGGCTCCCAGTCTGCACAACCTTTTTGCTGTGTGTCGGAATATGTATAACTGGCTACTG CAGAATCCCAAAAATGTCTGTGTTGTCCACTGCTTGGATGGACGGGCGGCATCATCAATTCTGGTTGGTG CTATGTTCATTTTCTGTAATCTCTACTCTACTCCTGGCCCAGCCATTCGATTGCTATATGCAAAGCGACC AGGAATTGGACTTTCACCATCCCATAGGAGATACCTGGGCTATATGTGTGACCTACTGGCAGACAAGCCC TACCGCCCTCACTTCAAGCCTCTCACAATTAAGTCGATCACTGTCAGTCCAATACCCTTTTTCAACAAAC AGAGGAATGGATGTCGCCCTTACTGTGATGTACTCATTGGAGAAACCAAAATATATTCGACTTGCACAGA TTTTGAACGAATGAAAGAATATCGTGTCCAAGATGGAAAAATCTTCATTCCCTTGAACATCACTGTGCAA GGAGACGTGGTTGTTTCCATGTATCACTTGAGGTCAACCATTGGGAGCCGGCTACAGGCTAAGGTGACCA ACACACAGATATTCCAGCTTCAGTTTCACACTGGATTCATACCACTGGACACAACAGTTTTAAAGTTCAC CAAGCCTGAGTTAGATGCATGTGATGTACCAGAAAAATATCCTCAGCTATTTCAGGTGACACTGGATGTA GAACTACAGCCCCATGACAAAGTAATAGACTTAACTCCACCATGGGAACATTACTGCACAAAAGATGTCA ATCCCAGCATCCTCTTCTCTTCTCACCAGGAACATCAAGATACGCTGGCCTTAGGAGGACAGGCTCCAAT AGATATCCCTCCAGACAACCCCAGGCATTACGGACAAAGTGGTTTCTTTGCCTCTCTCTGTTGGCAAGAT CAGAAATCGGAGAAGTCATTCTGTGAGGAGGACCACGCTGCCCTAGTGAATCAGGAAAGTGAGCAATCAG ATGATGAACTTCTGACACTTTCCAGTCCGCATGGCAATGCCAATGGTGACAAGCCTCATGGAGTCAAGAA GCCCAGCAAAAAGCAGCAGGAGCCAGCAGCCCCTCCACCCCCTGAGGATGTGGACCTTTTGGGCCTGGAA GGGTCTGCAATGAGTAACAGCTTCTCTCCGCCAGCGGCTCCTCCCACCAATTCTGAACTACTGAGTGACC TGTTTGGGGGTGGAGGTGCAGCTGGTCCCACCCAGGCTGGACAGTCAGGAGTGGAAGATGTGTTTCATCC TAGTGGACCTGCGTCTACCCAGTCAACACCACGCCGCTCTGCCACCTCCACCTCTGCGTCTCCAACCCTA AGAGTGGGAGAAGGTGCCACCTTTGACCCATTTGGAGCACCTTCTAAACCATCAGGTCAGGATTTGCTGG GTTCTTTTCTGAACACATCCAGTGCTTCCAGTGACCCCTTTCTCCAGCCAACAAGAAGTCCTTCGCCCAC AGTACATGCTTCTAGTACGCCTGCTGTGAACATTCAGCCAGATGTTTCTGGAGGTTGGGACTGGCATGCT AAACCAGGAGGCTTTGGAATGGGAAGCAAGTCAGCTGCCACCAGCCCAACCGGATCCTCGCATGGTACTC CCACCCATCAAAGCAAACCCCAGACTCTGGATCCTTTTGCCGACCTTGGGACACTAGGTAGTTCTTCCTT TGCCAGCAAACCCACCACACCAACTGGATTGGGTGGAGGATTCCCGCCTCTCAGCTCGCCACAGAAGGCG TCTCCCCAGCCTATGGGTGGCGGGTGGCAGCAGGGAGGTGCCTACAACTGGCAGCAGCCACAGCCTAAGC CTCAGCCCAGCATGCCCCACTCCTCTCCCCAGAACCGACCCAACTACAACGTGAGCTTCTCAGCCATGCC TGGGGGCCAGAACGAACGTGGGAAAGGATCAAGTAATTTGGAAGGGAAACAAAAAGCAGCTGATTTTGAA GACCTACTCTCTGGTCAAGGTTTCAATGCTCACAAAGACAAAAAGGGGCCTCGGACAATAGCTGAGATGA GAAAGGAGGAAATGGCCAAGGAAATGGATCCTGAGAAATTAAAGATTCTGGAATGGATTGAAGGCAAAGA AAGAAATATCAGAGCCCTTCTTTCCACGATGCATACCGTACTATGGGCTGGGGAGACCAAGTGGAAACCA GTTGGCATGGCAGACCTGGTAACACCAGAGCAGGTGAAGAAGGTGTACAGGAAGGCTGTCCTGGTGGTGC ACCCAGATAAAGCTACTGGGCAACCCTATGAACAATACGCAAAGATGATTTTCATGGAGCTCAATGATGC CTGGTCTGAATTTGAAAACCAAGGCCAAAAGCCCTTATATTAA
Translation (900 aa):
MEPSYGGGLFDMVKGGAGRLFSNLKDNLKDTLKDTSSRVIQSVTSYTKGDLDFTYVTSRIIVMSFPLDNV DIGFRNQVDDIRSFLDSRHLDHYTVYNLSPKSYRTAKFHSRVSECSWPIRQAPSLHNLFAVCRNMYNWLL QNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPGPAIRLLYAKRPGIGLSPSHRRYLGYMCDLLADKP YRPHFKPLTIKSITVSPIPFFNKQRNGCRPYCDVLIGETKIYSTCTDFERMKEYRVQDGKIFIPLNITVQ GDVVVSMYHLRSTIGSRLQAKVTNTQIFQLQFHTGFIPLDTTVLKFTKPELDACDVPEKYPQLFQVTLDV ELQPHDKVIDLTPPWEHYCTKDVNPSILFSSHQEHQDTLALGGQAPIDIPPDNPRHYGQSGFFASLCWQD QKSEKSFCEEDHAALVNQESEQSDDELLTLSSPHGNANGDKPHGVKKPSKKQQEPAAPPPPEDVDLLGLE GSAMSNSFSPPAAPPTNSELLSDLFGGGGAAGPTQAGQSGVEDVFHPSGPASTQSTPRRSATSTSASPTL RVGEGATFDPFGAPSKPSGQDLLGSFLNTSSASSDPFLQPTRSPSPTVHASSTPAVNIQPDVSGGWDWHA KPGGFGMGSKSAATSPTGSSHGTPTHQSKPQTLDPFADLGTLGSSSFASKPTTPTGLGGGFPPLSSPQKA SPQPMGGGWQQGGAYNWQQPQPKPQPSMPHSSPQNRPNYNVSFSAMPGGQNERGKGSSNLEGKQKAADFE DLLSGQGFNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKP VGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH