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Report for CCDS54973.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54973.1 Public Homo sapiens 6 CARMIL1 24 110 108 CCDS HistoryNCBI Gene:55604Re-query CCDS DB by CCDS ID:54973.1Re-query CCDS DB by GeneID:55604See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54973.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329474.7 ENSP00000331983.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000329474.7Link to Ensembl Protein Viewer:ENSP00000331983.6Re-query CCDS DB by Nucleotide ID:ENST00000329474Re-query CCDS DB by Protein ID:ENSP00000331983
Original member Current member NCBI NM_017640.6 NP_060110.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017640.6Link to Protein Sequence:NP_060110.4Re-query CCDS DB by Nucleotide ID:NM_017640Re-query CCDS DB by Protein ID:NP_060110Link to BLAST:NP_060110.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060110.4 1371 Q5VZK9-1 1371 100% 0 0

Chromosomal Locations for CCDS 54973.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 25279796 25279835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25284812 25284909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25420114 25420164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25426501 25426560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25435483 25435604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25449898 25449995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25450339 25450409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25450638 25450711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25465873 25465948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25471169 25471257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25472427 25472521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25482257 25482343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25488482 25488585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25491732 25491809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25491948 25492024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25495111 25495215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25500166 25500235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25509656 25509737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25510507 25510606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25510708 25510762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25515675 25515847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25517347 25517415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25520244 25520337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25528795 25528893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25537855 25537983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25539947 25540078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25550910 25551085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25554009 25554096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25556701 25556850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25580924 25580990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25581243 25581439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25594415 25594527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25600314 25600746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25604812 25604893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25606061 25606273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25610050 25610181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25619447 25619583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4116 nt):
ATGACCGAGGAGAGCTCTGACGTTCCCAGGGAGTTGATAGAAAGCATAAAGGATGTTATTGGCAGAAAGA
TAAAAATTTCAGTGAAGAAGAAAGTAAAGTTGGAAGTTAAGGGAGACAAAGTTGAAAACAAAGTGCTGGT
CCTTACATCATGCCGAGCCTTCCTTGTAACAGCGCGAATCCCCACCAAGCTCGAGTTAACCTTCAGCTAC
TTGGAGATTCATGGCGTCGTTTGCAGCAAGTCAGCTCAGATGATTGTGGAAACTGAGAAGTGCAGCATTT
CCATGAAGATGGCGTCACCCGAGGACGTGAGTGAGGTGCTGGCTCACATAGGCACCTGCCTGAGGAAGAT
ATTTCCTGGCCTCTCTCCAGTGAGAATCATGAAAAAAGTCTCCATGGAGCCATCTGAGCGCCTGGCTAGT
CTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCAGGGCCCCTGTGGTGGATTTTCTCAGATGTATG
CCTGTGTTTGTGACTGGCTTGGATTTTCATACAGGGAAGAAGTACAATGGGATGTGGATACAATTTATCT
TACCCAAGACACCAGGGAATTGAATTTACAAGATTTTAGTCATCTTGACCACAGGGACCTAATACCTATC
ATTGCTGCTCTGGAATATAATCAGTGGTTCACAAAACTGTCCTCTAAGGATCTAAAACTGTCCACTGATG
TCTGTGAACAGATCTTGAGGGTGGTGAGTAGGTCCAATCGACTGGAAGAATTGGTGTTGGAAAATGCTGG
ACTTAGAACAGATTTTGCACAAAAACTGGCCAGTGCTCTAGCACATAATCCCAACTCAGGACTCCACACA
ATTAACCTTGCTGGCAACCCACTGGAGGATAGAGGTGTGTCCTCTTTAAGTATTCAATTTGCCAAACTCC
CAAAGGGATTAAAGCACTTAAATTTATCTAAAACCTCATTATCACCTAAAGGGGTGAACAGCCTTTCTCA
GTCACTCAGTGCCAATCCATTGACCGCCTCTACCCTTGTCCACCTCGACCTCTCAGGGAACGTCCTTCGT
GGAGATGACCTCTCACACATGTATAATTTTTTGGCCCAGCCAAATGCCATTGTTCATCTGGATTTATCCA
ATACAGAATGTTCCCTGGACATGGTCTGTGGAGCTCTTCTCCGTGGATGCCTTCAATATTTAGCTGTGCT
CAACCTCTCCAGAACTGTCTTCTCTCACCGGAAAGGAAAAGAAGTACCTCCATCTTTCAAGCAATTTTTT
AGTAGTTCTCTGGCTTTGATGCACATCAACCTTTCAGGCACAAAACTGTCTCCTGAGCCCTTAAAAGCAC
TGTTATTGGGCCTGGCTTGTAATCATAACTTGAAAGGGGTTTCTCTGGATCTCAGCAACTGTGAGCTGAG
ATCAGGAGGTGCTCAAGTATTAGAAGGTTGCATTGCTGAAATACACAACATCACCAGCTTAGACATCTCT
GACAATGGTTTAGAATCTGACCTATCTACCTTAATAGTGTGGCTCAGTAAAAACAGATCAATACAACACC
TGGCGTTAGGCAAAAATTTTAATAATATGAAATCCAAAAATCTGACACCTGTATTGGACAACTTAGTACA
GATGATTCAAGATGAAGAATCACCTCTGCAGTCCTTGTCCCTGGCTGACTCGAAACTCAAGACTGAGGTC
ACCATCATCATCAATGCCCTGGGAAGCAACACCTCCCTGACCAAAGTGGACATTAGCGGCAACGGAATGG
GGGACATGGGAGCGAAGATGCTGGCCAAAGCACTGCAGATCAACACTAAGCTCAGGACTGTAATATGGGA
CAAGAACAACATCACTGCACAAGGCTTTCAGGATATAGCTGTTGCTATGGAAAAGAACTACACATTAAGA
TTTATGCCAATTCCTATGTATGATGCTTCTCAAGCCCTAAAAACAAACCCTGAAAAAACAGAAGACGCTC
TGCAAAAGATAGAAAACTACCTGCTACGAAATCACGAGACTAGAAAATACCTTCAAGAGCAGGCCTACCG
CCTGCAGCAGGGTATTGTCACCAGCACCACCCAGCAGATGATTGACAGAATATGTGTGAAAGTACAAGAT
CATCTCAACTCCTTACGAAATTGTGGGGGAGACGCTATCCAGGAAGATTTAAAATCAGCAGAGCGGCTCA
TGCGTGATGCTAAGAACTCTAAAACGTTGTTACCAAATTTATACCATGTTGGTGGTGCATCTTGGGCGGG
AGCCAGTGGCTTACTATCCAGTCCAATTCAGGAGACCCTGGAATCAATGGCTGGAGAAGTTACAAGAGTA
GTAGATGAACAACTAAAGGCGTTGCTTGAGTCCATGGTTGATGCTGCTGAGAATCTTTGTCCCAATGTGA
TGAAAAAAGCCCACATTCGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTATTCCACGTACCTT
TGTTAAAAATGTCCTGTTGGAGCAGTCTGGAATTGATATCCTTAACAAAATTAGTGAAGTAAAATTGACA
GTGGCCTCGTTCCTGTCTGATAGAATTGTGGATGAAATCCTGGATGCACTCTCACATTGCCATCATAAAC
TGGCTGACCATTTCAGCAGACGTGGCAAGACCCTTCCTCAACAAGAATCCTTAGAGATCGAGCTGGCTGA
GGAGAAGCCAGTTAAACGTTCCATCATCACAGTGGAGGAGCTAACAGAGATAGAGCGTTTGGAAGATCTG
GATACCTGTATGATGACCCCTAAATCCAAAAGGAAGAGTATCCATAGCCGAATGCTGCGGCCTGTTTCTA
GGGCTTTTGAAATGGAGTTTGATCTAGATAAAGCGCTGGAAGAGGTACCAATTCACATCGAAGACCCGCC
CTTCCCATCCCTCAGACAGGAGAAGCGGAGCTCGGGATTTATCTCTGAGTTGCCCTCTGAAGAGGGGAAG
AAGCTGGAACACTTTACCAAGTTAAGGCCAAAAAGGAATAAGAAGCAGCAACCCACCCAAGCAGCGGTCT
GTGCTGCCAACATAGTCTCACAAGATGGTGAACAGAATGGTCTCATGGGGAGAGTGGATGAAGGTGTAGA
TGAATTTTTTACCAAGAAGGTGACCAAAATGGATTCCAAGAAATGGTCAACAAGAGGCTCAGAGTCCCAT
GAGCTTAATGAAGGAGGAGATGAAAAGAAAAAGCGAGATTCTCGGAAAAGTAGTGGCTTTCTCAATTTAA
TCAAATCCCGGTCCAAATCCGAGCGACCACCAACGATCTTGATGACAGAAGAACCCTCCTCACCAAAAGG
GGCAGTCAGAAGTCCACCTGTGGACTGTCCCAGGAAGGACACAAAGGCCGCCGAGCACAATGGCAATTCT
GAACGGATAGAGGAGATAAAAACACCTGACTCCTTTGAAGAGAGTCAAGGGGAAGAAATAGGGAAGGTGG
AACGGAGTGACAGCAAGAGCAGCCCACAGGCAGGGCGGAGGTATGGGGTCCAGGTGATGGGCAGTGGTCT
GCTGGCAGAGATGAAAGCCAAGCAAGAGAAGAGAGCTGCGTGTGCGCAGAAGAAGCTTGGGAATGATGCC
GTATCCCAGGATTCTTCCAGCCCAGCTTTGAGCGGCGTAGAACGGTCGGATGGAGGTGGGGCAGTGCCTA
AACTGCACCCAGGTCTTCCAGAGAACCGCTTTGGTTTGGGAACACCAGAAAAGAATACCAAAGCAGAACC
CAAAGCGGAAGCAGGCTCCAGGTCTCGGAGCTCATCCAGCACACCTACGAGCCCGAAGCCCCTCCTGCAG
TCCCCCAAACCCAGTCTGGCAGCACGGCCCGTCATCCCGCAGAAACCAAGAACCGCCTCACGGCCTGATG
ACATTCCAGACTCTCCATCTAGCCCGAAAGTTGCCCTTCTTCCACCTGTCCTGAAAAAAGTTCCTTCAGA
CAAAGAGAGAGATGGCCAGAGTAGCCCCCAGCCCAGCCCCAGGACATTTTCACAGGAAGTTTCAAGGAGA
AGCTGGGGCCAGCAGGCCCAGGAGTATCAAGAACAAAAGCAACGGTCCTCCAGTAAAGATGGCCATCAAG
GCAGCAAATCTAATGACTCCGGGGAAGAAGCAGAAAAAGAGTTTATTTTTGTGTAA

Translation (1371 aa):
MTEESSDVPRELIESIKDVIGRKIKISVKKKVKLEVKGDKVENKVLVLTSCRAFLVTARIPTKLELTFSY
LEIHGVVCSKSAQMIVETEKCSISMKMASPEDVSEVLAHIGTCLRKIFPGLSPVRIMKKVSMEPSERLAS
LQALWDSQTVAEQGPCGGFSQMYACVCDWLGFSYREEVQWDVDTIYLTQDTRELNLQDFSHLDHRDLIPI
IAALEYNQWFTKLSSKDLKLSTDVCEQILRVVSRSNRLEELVLENAGLRTDFAQKLASALAHNPNSGLHT
INLAGNPLEDRGVSSLSIQFAKLPKGLKHLNLSKTSLSPKGVNSLSQSLSANPLTASTLVHLDLSGNVLR
GDDLSHMYNFLAQPNAIVHLDLSNTECSLDMVCGALLRGCLQYLAVLNLSRTVFSHRKGKEVPPSFKQFF
SSSLALMHINLSGTKLSPEPLKALLLGLACNHNLKGVSLDLSNCELRSGGAQVLEGCIAEIHNITSLDIS
DNGLESDLSTLIVWLSKNRSIQHLALGKNFNNMKSKNLTPVLDNLVQMIQDEESPLQSLSLADSKLKTEV
TIIINALGSNTSLTKVDISGNGMGDMGAKMLAKALQINTKLRTVIWDKNNITAQGFQDIAVAMEKNYTLR
FMPIPMYDASQALKTNPEKTEDALQKIENYLLRNHETRKYLQEQAYRLQQGIVTSTTQQMIDRICVKVQD
HLNSLRNCGGDAIQEDLKSAERLMRDAKNSKTLLPNLYHVGGASWAGASGLLSSPIQETLESMAGEVTRV
VDEQLKALLESMVDAAENLCPNVMKKAHIRQDLIHASTEKISIPRTFVKNVLLEQSGIDILNKISEVKLT
VASFLSDRIVDEILDALSHCHHKLADHFSRRGKTLPQQESLEIELAEEKPVKRSIITVEELTEIERLEDL
DTCMMTPKSKRKSIHSRMLRPVSRAFEMEFDLDKALEEVPIHIEDPPFPSLRQEKRSSGFISELPSEEGK
KLEHFTKLRPKRNKKQQPTQAAVCAANIVSQDGEQNGLMGRVDEGVDEFFTKKVTKMDSKKWSTRGSESH
ELNEGGDEKKKRDSRKSSGFLNLIKSRSKSERPPTILMTEEPSSPKGAVRSPPVDCPRKDTKAAEHNGNS
ERIEEIKTPDSFEESQGEEIGKVERSDSKSSPQAGRRYGVQVMGSGLLAEMKAKQEKRAACAQKKLGNDA
VSQDSSSPALSGVERSDGGGAVPKLHPGLPENRFGLGTPEKNTKAEPKAEAGSRSRSSSSTPTSPKPLLQ
SPKPSLAARPVIPQKPRTASRPDDIPDSPSSPKVALLPPVLKKVPSDKERDGQSSPQPSPRTFSQEVSRR
SWGQQAQEYQEQKQRSSSKDGHQGSKSNDSGEEAEKEFIFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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