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Report for CCDS54113.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54113.1 Public Homo sapiens 17 SYNRG 24 110 108 CCDS HistoryNCBI Gene:11276Re-query CCDS DB by CCDS ID:54113.1Re-query CCDS DB by GeneID:11276See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54113.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000614941.4 ENSP00000481151.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614941.4Link to Ensembl Protein Viewer:ENSP00000481151.1Re-query CCDS DB by Nucleotide ID:ENST00000614941Re-query CCDS DB by Protein ID:ENSP00000481151
Original member Current member NCBI NM_001163547.3 NP_001157019.1 Accepted alive Link to Nucleotide Sequence:NM_001163547.3Link to Protein Sequence:NP_001157019.1Re-query CCDS DB by Nucleotide ID:NM_001163547Re-query CCDS DB by Protein ID:NP_001157019Link to BLAST:NP_001157019.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157019.1 1108 Q9UMZ2-6 1108 100% 0 0

Chromosomal Locations for CCDS 54113.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37518940 37519071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37520179 37520214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37520538 37520648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37535979 37536127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37538324 37538420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37539192 37539245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37540380 37540543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37541972 37542430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37553115 37554059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37561195 37561257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37561471 37561589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37568791 37568924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37571791 37571987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37576341 37576418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37584648 37584759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37585325 37585430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37586419 37586549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37596223 37596344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37600363 37600403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37609279 37609355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3327 nt):
ATGGCGCTGCGGCCAGGAGCTGGTTCTGGTGGCGGCGGGGCCGCGGGAGCTGGCGCGGGGTCCGCCGGGG
GAGGCGGCTTCATGTTTCCTGTTGCAGGTGGGATAAGACCCCCTCAAGCAGGCCTGATGCCGATGCAGCA
ACAAGGATTTCCTATGGTCTCTGTCATGCAGCCTAATATGCAAGGCATTATGGGAATGAATTACAGCTCT
CAGATGTCCCAAGGACCTATTGCTATGCAGGCAGGAATACCAATGGGACCAATGCCAGCAGCGGGAATGC
CTTACCTAGGACAAGCACCCTTCCTGGGCATGCGTCCTCCAGGCCCACAGTACACTCCAGACATGCAGAA
GCAGTTTGCCGAAGAGCAGCAGAAACGATTTGAACAGCAGCAAAAACTCTTAGAAGAAGAAAGAAAAAGA
CGCCAGTTTGAAGAGCAGAAGCAAAAGCTCAGACTTTTGAGCAGTGTGAAACCCAAGACAGGAGAGAAGA
GTAGAGATGATGCTTTGGAAGCCATAAAAGGAAATTTAGATGGGTTTTCCAGAGATGCAAAAATGCACCC
TACTCCAGCATCGCACCCCAAGAAACCAGGTGTGGGAGTATTTCCCTCACAGGATCCTGCTCAGCCCAGA
ATGCCTCCTTGGATTTACAATGAGAGTTTGGTTCCAGATGCCTATAAGAAAATCTTAGAAACCACAATGA
CTCCAACTGGAATAGATACTGCCAAACTGTATCCCATTCTGATGTCATCTGGGCTTCCCAGGGAAACTCT
TGGACAGATATGGGCCTTAGCTAATCGAACTACACCTGGCAAACTTACAAAAGAAGAACTTTATACCGTT
CTAGCCATGATAGCGGTAACACAGGTAGTAAAGCCAGAAGAAGATGACTTCCAGGATTTTCAAGATGCTT
CTAAGTCAGGATCCCTTGATGACTCATTCAGTGATTTCCAAGAGTTGCCTGCTTCTTCAAAAACAAGTAA
CTCCCAGCATGGAAACAGTGCCCCTTCTTTGTTGATGCCACTTCCTGGAACTAAAGCATTGCCTTCAATG
GACAAATATGCTGTGTTTAAAGGAATTGCAGCTGACAAGTCCTCTGAAAATACTGTTCCACCTGGAGATC
CTGGTGATAAATATAGTGCTTTCAGAGAACTTGAACAGACAGCAGAGAATAAACCTTTAGGAGAAAGCTT
TGCAGAATTCAGATCTGCAGGAACTGATGATGGTTTCACCGATTTTAAAACAGCCGATAGTGTATCACCA
CTAGAGCCACCAACAAAAGACAAAACTTTTCCACCATCCTTCCCCTCAGGAACTATACAACAGAAACAAC
AAACACAAGTGAAAAACCCTCTGAACTTAGCAGACCTAGATATGTTTTCCTCAGTTAATTGCAGCAGCGA
GAAACCATTGTCTTTTTCAGCTGTGTTTAGCACATCAAAATCAGTTTCTACACCACAGTCAACAGGTTCT
GCTGCTACTATGACAGCATTGGCAGCAACAAAAACTTCTAGTTTGGCTGATGATTTTGGAGAATTCAGCC
TTTTTGGGGAATATTCTGGTCTAGCACCTGTTGGGGAGCAGGATGACTTTGCAGATTTTATGGCTTTCAG
TAATAGCTCTATTTCATCTGAGCAAAAGCCGGATGACAAATATGATGCCCTTAAAGAGGAAGCCAGTCCT
GTTCCTCTAACCAGCAACGTGGGCAGCACAGTGAAGGGTGGACAAAACTCGACTGCTGCGTCTACCAAGT
ACGATGTCTTCAGACAACTTTCTCTGGAAGGGTCTGGACTAGGTGTTGAAGACCTGAAAGATAACACTCC
TTCAGGAAAAAGTGATGATGATTTTGCTGACTTCCACTCCAGTAAATTTTCTTCCATAAACTCGGACAAA
TCCCTGGGAGAGAAAGCAGTGGCTTTCAGACACACCAAAGAAGACTCTGCATCAGTGAAGTCCTTAGATC
TCCCTTCCATTGGTGGCAGCAGTGTTGGCAAGGAGGACTCTGAAGATGCACTCTCTGTTCAGTTTGACAT
GAAATTGGCTGATGTGGGAGGAGATCTTAAGCATGTCATGTCTGATAGCTCTTTGGATTTACCAACAGTT
AGTGGCCAGCATCCTCCTGCTGCAGCAGGAAGTGGATCCCCCTCAGCCACCTCAATTCTTCAAAAGAAAG
AGACTTCATTTGGCAGTTCTGAAAACATCACCATGACATCTCTCTCCAAAGTAACGACCTTTGTAAGTGA
AGATGCTCTTCCAGAGACCACCTTCCCAGCTCTTGCCAGTTTTAAAGACACGATTCCTCAGACCAGTGAG
CAAAAGGAATATGAAAACAGAGACTATAAAGATTTCACAAAACAGGACCTGCCTACGGCTGAACGGAGCC
AGGAGGCCACGTGTCCCAGCCCAGCGTCCAGTGGTGCCTCTCAAGAAACCCCGAACGAATGTTCGGATGA
CTTTGGAGAGTTTCAAAGTGAAAAGCCCAAAATCAGCAAATTTGACTTCTTAGTAGCCACTTCACAAAGC
AAAATGAAATCCAGTGAAGAAATGATCAAAAGTGAGCTGGCAACCTTTGACCTTTCTGTTCAAGGATCAC
ACAAGAGGAGTTTGAGCCTTGGTGATAAAGAAATAAGCCGTTCTTCTCCTTCTCCAGCTTTGGAGCAGCC
TTTCAGAGACCGTTCCAATACTCTGAATGAGAAGCCCGCCCTGCCCGTCATCCGAGACAAGTACAAAGAC
CTGACGGGAGAGGTGGAGGAAAATGAGAGATATGCATATGAATGGCAGAGATGCCTGGGGAGTGCCCTGA
ATGTCATTAAGAAGGCAAATGATACCTTAAATGGAATCAGTAGTAGTTCTGTTTGCACAGAAGTAATTCA
GTCAGCTCAAGGCATGGAATATTTATTAGGTGTTGTTGAAGTGTACAGGGTAACCAAGCGTGTGGAGCTG
GGGATAAAAGCCACTGCAGTGTGCAGTGAGAAACTCCAGCAGTTGCTGAAGGACATCGATAAAGTATGGA
ATAACCTAATCGGCTTCATGTCACTCGCCACACTCACACCAGATGAAAACTCGCTGGATTTTTCCTCCTG
TATGTTACGGCCTGGGATTAAAAATGCTCAGGAGCTTGCCTGTGGAGTGTGCCTCTTGAATGTGGACTCG
AGGAGCCGGAAAGAAGAGAAGCCTGCAGAAGAACATCCTAAAAAAGCATTCAACTCAGAAACAGACAGTT
TCAAGCTGGCCTATGGAGGGCACCAGTATCACGCCAGCTGTGCCAACTTCTGGATCAACTGTGTCGAACC
AAAGCCTCCTGGCCTCGTCCTGCCTGACCTGCTCTGA

Translation (1108 aa):
MALRPGAGSGGGGAAGAGAGSAGGGGFMFPVAGGIRPPQAGLMPMQQQGFPMVSVMQPNMQGIMGMNYSS
QMSQGPIAMQAGIPMGPMPAAGMPYLGQAPFLGMRPPGPQYTPDMQKQFAEEQQKRFEQQQKLLEEERKR
RQFEEQKQKLRLLSSVKPKTGEKSRDDALEAIKGNLDGFSRDAKMHPTPASHPKKPGVGVFPSQDPAQPR
MPPWIYNESLVPDAYKKILETTMTPTGIDTAKLYPILMSSGLPRETLGQIWALANRTTPGKLTKEELYTV
LAMIAVTQVVKPEEDDFQDFQDASKSGSLDDSFSDFQELPASSKTSNSQHGNSAPSLLMPLPGTKALPSM
DKYAVFKGIAADKSSENTVPPGDPGDKYSAFRELEQTAENKPLGESFAEFRSAGTDDGFTDFKTADSVSP
LEPPTKDKTFPPSFPSGTIQQKQQTQVKNPLNLADLDMFSSVNCSSEKPLSFSAVFSTSKSVSTPQSTGS
AATMTALAATKTSSLADDFGEFSLFGEYSGLAPVGEQDDFADFMAFSNSSISSEQKPDDKYDALKEEASP
VPLTSNVGSTVKGGQNSTAASTKYDVFRQLSLEGSGLGVEDLKDNTPSGKSDDDFADFHSSKFSSINSDK
SLGEKAVAFRHTKEDSASVKSLDLPSIGGSSVGKEDSEDALSVQFDMKLADVGGDLKHVMSDSSLDLPTV
SGQHPPAAAGSGSPSATSILQKKETSFGSSENITMTSLSKVTTFVSEDALPETTFPALASFKDTIPQTSE
QKEYENRDYKDFTKQDLPTAERSQEATCPSPASSGASQETPNECSDDFGEFQSEKPKISKFDFLVATSQS
KMKSSEEMIKSELATFDLSVQGSHKRSLSLGDKEISRSSPSPALEQPFRDRSNTLNEKPALPVIRDKYKD
LTGEVEENERYAYEWQRCLGSALNVIKKANDTLNGISSSSVCTEVIQSAQGMEYLLGVVEVYRVTKRVEL
GIKATAVCSEKLQQLLKDIDKVWNNLIGFMSLATLTPDENSLDFSSCMLRPGIKNAQELACGVCLLNVDS
RSRKEEKPAEEHPKKAFNSETDSFKLAYGGHQYHASCANFWINCVEPKPPGLVLPDLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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