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Report for CCDS53782.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53782.1 Public Homo sapiens 12 RPAP3 24 110 108 CCDS HistoryNCBI Gene:79657Re-query CCDS DB by CCDS ID:53782.1Re-query CCDS DB by GeneID:79657See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53782.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000432584.7 ENSP00000401823.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000432584.7Link to Ensembl Protein Viewer:ENSP00000401823.3Re-query CCDS DB by Nucleotide ID:ENST00000432584Re-query CCDS DB by Protein ID:ENSP00000401823
Original member Current member NCBI NM_001146076.2 NP_001139548.1 Accepted alive Link to Nucleotide Sequence:NM_001146076.2Link to Protein Sequence:NP_001139548.1Re-query CCDS DB by Nucleotide ID:NM_001146076Re-query CCDS DB by Protein ID:NP_001139548Link to BLAST:NP_001139548.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139548.1 506 Q9H6T3-3 506 100% 0 0

Chromosomal Locations for CCDS 53782.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 47663505 47663590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47666980 47667080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47667754 47667851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47668916 47669102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47670107 47670345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47679493 47679594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47679704 47679774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47681696 47681817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47686780 47686907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47687876 47688001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47689125 47689195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47690518 47690639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47696276 47696343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1521 nt):
ATGGATGCCGATCCATATAATCCCGTGTTGCCAACGAACAGAGCGTCAGCATATTTTAGACTGAAAAAAT
TTGCTGTTGCTGAGTCTGATTGTAATTTAGCAGTTGCCTTGAATAGAAGTTATACAAAGGCTTATTCCAG
ACGAGGTGCTGCTCGATTTGCTTTGCAAAAATTAGAAGAGGCCAAAAAAGATTATGAAAGAGTATTAGAA
CTAGAACCAAATAACTTTGAAGCAACAAATGAACTCAGGAAAATCAGTCAGGCTTTAGCATCCAAAGAAA
ACTCATATCCAAAGGAAGCTGACATAGTGATTAAGTCAACAGAAGGAGAGCGAAAGCAAATTGAAGCACA
ACAGAATAAGCAGCAGGCCATTTCAGAGAAAGATCGGGGGAATGGATTTTTCAAAGAGGGGAAATATGAA
AGAGCAATTGAATGCTATACTCGAGGGATAGCAGCAGATGGTGCTAATGCCCTTCTTCCAGCTAACAGAG
CTATGGCCTATCTGAAGATTCAGAAATATGAAGAAGCTGAAAAAGACTGCACACAAGCCATTTTATTAGA
TGGCTCATATTCTAAAGCTTTTGCCAGAAGAGGAACTGCAAGAACATTTTTGGGAAAGCTAAATGAGGCA
AAACAAGATTTTGAAACTGTTTTACTTCTGGAACCTGGAAATAAGCAAGCAGTAACTGAACTCTCCAAAA
TTAAAAAGGAATTAATTGAGAAAGGACACTGGGATGATGTCTTTCTTGATTCCACACAAAGACAAAATGT
GGTAAAACCCATTGATAATCCACCGCATCCTGGATCAACTAAACCACTCAAGAAGGTTATTATTGAAGAA
ACTGGTAATTTGATACAGACTATTGATGTGCCAGATAGCACTACTGCTGCTGCTCCAGAGAATAATCCTA
TTAATCTAGCAAATGTAATAGCAGCCACAGGCACCACAAGTAAGAAGAATTCAAGCCAAGATGACCTTTT
TCCCACAAGTGATACTCCAAGAGCAAAAGTATTGAAAATAGAAGAAGTCAGTGATACTTCATCCCTGCAA
CCTCAAGCCAGTTTGAAGCAGGATGTATGTCAGTCTTACAGCGAGAAAATGCCCATAGAGATAGAACAAA
AACCTGCTCAGTTTGCCACAACTGTTCTTCCTCCAATTCCTGCAAACTCGTTCCAGCTCGAATCTGATTT
CAGACAATTGAAAAGTTCTCCAGATATGTTGTATCAGTATTTAAAGCAAATTGAACCATCTTTGTATCCT
AAGTTGTTTCAGAAAAATCTGGATCCAGATGTATTCAACCAGATCGTTAAAATTCTGCATGACTTTTACA
TTGAGAAAGAAAAGCCATTACTCATCTTTGAAATCTTACAAAGACTTTCTGAACTAAAAAGGTTTGATAT
GGCAGTGATGTTTATGTCAGAAACAGAGAAAAAGATTGCACGTGCATTATTTAATCACATAGACAAGTCA
GGATTGAAGGATAGTTCTGTCGAAGAACTCAAGAAAAGATACGGTGGTTGA

Translation (506 aa):
MDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLE
LEPNNFEATNELRKISQALASKENSYPKEADIVIKSTEGERKQIEAQQNKQQAISEKDRGNGFFKEGKYE
RAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEA
KQDFETVLLLEPGNKQAVTELSKIKKELIEKGHWDDVFLDSTQRQNVVKPIDNPPHPGSTKPLKKVIIEE
TGNLIQTIDVPDSTTAAAPENNPINLANVIAATGTTSKKNSSQDDLFPTSDTPRAKVLKIEEVSDTSSLQ
PQASLKQDVCQSYSEKMPIEIEQKPAQFATTVLPPIPANSFQLESDFRQLKSSPDMLYQYLKQIEPSLYP
KLFQKNLDPDVFNQIVKILHDFYIEKEKPLLIFEILQRLSELKRFDMAVMFMSETEKKIARALFNHIDKS
GLKDSSVEELKKRYGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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