NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5203.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5203.1 Public Homo sapiens 6 PLAGL1 24 110 108 CCDS HistoryNCBI Gene:5325Re-query CCDS DB by CCDS ID:5203.1Re-query CCDS DB by GeneID:5325See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5203.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367572.3 ENSP00000356544.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367572.3Link to Ensembl Protein Viewer:ENSP00000356544.1Re-query CCDS DB by Nucleotide ID:ENST00000367572Re-query CCDS DB by Protein ID:ENSP00000356544
Original member Current member EBI ENST00000437412.5 ENSP00000392418.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000437412.5Link to Ensembl Protein Viewer:ENSP00000392418.1Re-query CCDS DB by Nucleotide ID:ENST00000437412Re-query CCDS DB by Protein ID:ENSP00000392418
Original member Current member EBI ENST00000417959.4 ENSP00000395960.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000417959.4Link to Ensembl Protein Viewer:ENSP00000395960.2Re-query CCDS DB by Nucleotide ID:ENST00000417959Re-query CCDS DB by Protein ID:ENSP00000395960
Original member Current member EBI ENST00000647880.1 ENSP00000496815.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647880.1Link to Ensembl Protein Viewer:ENSP00000496815.1Re-query CCDS DB by Nucleotide ID:ENST00000647880Re-query CCDS DB by Protein ID:ENSP00000496815
Original member Current member NCBI NM_001080955.3 NP_001074424.1 Accepted alive Link to Nucleotide Sequence:NM_001080955.3Link to Protein Sequence:NP_001074424.1Re-query CCDS DB by Nucleotide ID:NM_001080955Re-query CCDS DB by Protein ID:NP_001074424Link to BLAST:NP_001074424.1
Original member Current member NCBI NM_001080956.3 NP_001074425.1 Accepted alive Link to Nucleotide Sequence:NM_001080956.3Link to Protein Sequence:NP_001074425.1Re-query CCDS DB by Nucleotide ID:NM_001080956Re-query CCDS DB by Protein ID:NP_001074425Link to BLAST:NP_001074425.1
Original member Current member NCBI NM_001289037.2 NP_001275966.1 Accepted alive Link to Nucleotide Sequence:NM_001289037.2Link to Protein Sequence:NP_001275966.1Re-query CCDS DB by Nucleotide ID:NM_001289037Re-query CCDS DB by Protein ID:NP_001275966Link to BLAST:NP_001275966.1
Original member Current member NCBI NM_001289038.2 NP_001275967.1 Accepted alive Link to Nucleotide Sequence:NM_001289038.2Link to Protein Sequence:NP_001275967.1Re-query CCDS DB by Nucleotide ID:NM_001289038Re-query CCDS DB by Protein ID:NP_001275967Link to BLAST:NP_001275967.1
Original member Current member NCBI NM_001289039.2 NP_001275968.1 Accepted alive Link to Nucleotide Sequence:NM_001289039.2Link to Protein Sequence:NP_001275968.1Re-query CCDS DB by Nucleotide ID:NM_001289039Re-query CCDS DB by Protein ID:NP_001275968Link to BLAST:NP_001275968.1
Original member Current member NCBI NM_001289040.2 NP_001275969.1 Accepted alive Link to Nucleotide Sequence:NM_001289040.2Link to Protein Sequence:NP_001275969.1Re-query CCDS DB by Nucleotide ID:NM_001289040Re-query CCDS DB by Protein ID:NP_001275969Link to BLAST:NP_001275969.1
Original member Current member NCBI NM_001289041.2 NP_001275970.1 Accepted alive Link to Nucleotide Sequence:NM_001289041.2Link to Protein Sequence:NP_001275970.1Re-query CCDS DB by Nucleotide ID:NM_001289041Re-query CCDS DB by Protein ID:NP_001275970Link to BLAST:NP_001275970.1
Original member Current member NCBI NM_001317158.1 NP_001304087.1 Accepted alive Link to Nucleotide Sequence:NM_001317158.1Link to Protein Sequence:NP_001304087.1Re-query CCDS DB by Nucleotide ID:NM_001317158Re-query CCDS DB by Protein ID:NP_001304087Link to BLAST:NP_001304087.1
Original member Current member NCBI NM_001317160.2 NP_001304089.1 Accepted alive Link to Nucleotide Sequence:NM_001317160.2Link to Protein Sequence:NP_001304089.1Re-query CCDS DB by Nucleotide ID:NM_001317160Re-query CCDS DB by Protein ID:NP_001304089Link to BLAST:NP_001304089.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074424.1 411 Q9UM63-2 411 100% 0 0
NP_001074425.1 411 Q9UM63-2 411 100% 0 0
NP_001275966.1 411 Q9UM63-2 411 100% 0 0
NP_001275967.1 411 Q9UM63-2 411 100% 0 0
NP_001275968.1 411 Q9UM63-2 411 100% 0 0
NP_001275969.1 411 Q9UM63-2 411 100% 0 0
NP_001275970.1 411 Q9UM63-2 411 100% 0 0
NP_001304087.1 411 Q9UM63-2 411 100% 0 0
NP_001304089.1 411 Q9UM63-2 411 100% 0 0

Chromosomal Locations for CCDS 5203.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 143941424 143942659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGGCTACCCATTCTCCCCAGAAATCTCACCAGTGTGCTCACTGTGAGAAGACGTTCAACCGGAAAGACC
ACCTGAAAAACCACCTCCAGACCCACGACCCCAACAAAATGGCCTTTGGGTGTGAGGAGTGTGGGAAGAA
GTACAACACCATGCTGGGCTATAAGAGGCACCTGGCCCTCCATGCGGCCAGCAGTGGGGACCTCACCTGT
GGGGTCTGTGCCCTGGAGCTAGGGAGCACCGAGGTGCTACTGGACCACCTCAAAGCCCATGCGGAAGAGA
AGCCCCCTAGCGGAACCAAGGAAAAGAAGCACCAGTGCGACCACTGTGAAAGATGCTTCTACACCCGGAA
GGATGTGCGACGCCACCTGGTGGTCCACACAGGATGCAAGGACTTCCTGTGCCAGTTCTGTGCCCAGAGA
TTTGGGCGCAAGGATCACCTCACCCGGCATACCAAGAAGACCCACTCACAGGAGCTGATGAAAGAGAGCT
TGCAGACCGGAGACCTTCTGAGCACCTTCCACACCATCTCGCCTTCATTCCAACTGAAGGCTGCTGCCTT
GCCTCCTTTCCCTTTAGGAGCTTCTGCCCAGAACGGGCTTGCAAGTAGCTTGCCAGCTGAGGTCCATAGC
CTCACCCTCAGTCCCCCAGAACAAGCCGCCCAGCCTATGCAGCCGCTGCCAGAGTCCCTGGCCTCCCTCC
ACCCCTCGGTATCCCCTGGCTCTCCTCCGCCACCCCTTCCCAATCACAAGTACAACACCACTTCTACCTC
ATACTCCCCACTTGCAAGCCTGCCCCTCAAAGCAGATACTAAAGGTTTTTGCAATATCAGTTTGTTTGAG
GACTTGCCTCTGCAAGAGCCTCAGTCACCTCAAAAGCTCAACCCAGGTTTTGATCTGGCTAAGGGAAATG
CTGGTAAAGTAAACCTGCCCAAGGAGCTGCCTGCAGATGCTGTGAACCTAACAATACCTGCCTCTCTGGA
CCTGTCCCCCCTGTTGGGCTTCTGGCAGCTGCCCCCTCCTGCTACCCAAAATACCTTTGGGAATAGCACT
CTTGCCCTGGGGCCTGGGGAATCTTTGCCCCACAGGTTAAGCTGTCTGGGGCAGCAGCAGCAAGAACCCC
CACTTGCCATGGGCACTGTGAGCCTGGGCCAGCTCCCCCTGCCCCCCATCCCTCATGTGTTCTCAGCTGG
CACTGGCTCTGCCATCCTGCCTCATTTCCATCATGCATTCAGATAA

Translation (411 aa):
MATHSPQKSHQCAHCEKTFNRKDHLKNHLQTHDPNKMAFGCEECGKKYNTMLGYKRHLALHAASSGDLTC
GVCALELGSTEVLLDHLKAHAEEKPPSGTKEKKHQCDHCERCFYTRKDVRRHLVVHTGCKDFLCQFCAQR
FGRKDHLTRHTKKTHSQELMKESLQTGDLLSTFHTISPSFQLKAAALPPFPLGASAQNGLASSLPAEVHS
LTLSPPEQAAQPMQPLPESLASLHPSVSPGSPPPPLPNHKYNTTSTSYSPLASLPLKADTKGFCNISLFE
DLPLQEPQSPQKLNPGFDLAKGNAGKVNLPKELPADAVNLTIPASLDLSPLLGFWQLPPPATQNTFGNST
LALGPGESLPHRLSCLGQQQQEPPLAMGTVSLGQLPLPPIPHVFSAGTGSAILPHFHHAFR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH