NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4950.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4950.1 Public Homo sapiens 6 GCM1 24 110 108 CCDS HistoryNCBI Gene:8521Re-query CCDS DB by CCDS ID:4950.1Re-query CCDS DB by GeneID:8521See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4950.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259803.8 ENSP00000259803.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000259803.8Link to Ensembl Protein Viewer:ENSP00000259803.7Re-query CCDS DB by Nucleotide ID:ENST00000259803Re-query CCDS DB by Protein ID:ENSP00000259803
Original member Current member NCBI NM_003643.4 NP_003634.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003643.4Link to Protein Sequence:NP_003634.2Re-query CCDS DB by Nucleotide ID:NM_003643Re-query CCDS DB by Protein ID:NP_003634Link to BLAST:NP_003634.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003634.2 436 Q9NP62 436 100% 0 0

Chromosomal Locations for CCDS 4950.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 53128206 53128946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53130803 53130931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53132007 53132119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53134072 53134324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53145558 53145632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGGAACCTGACGACTTTGATTCTGAAGACAAAGAGATATTAAGCTGGGATATTAATGATGTGAAACTGC
CACAGAACGTGAAAAAAACCGACTGGTTCCAGGAGTGGCCAGATTCCTATGCCAAACACATCTACAGCTC
GGAGGACAAGAATGCGCAGCGGCACCTGAGCAGCTGGGCCATGCGCAATACCAACAACCACAACTCCCGC
ATCCTCAAGAAGTCCTGCCTGGGTGTGGTGGTGTGCGGCCGCGACTGTCTCGCAGAGGAGGGGCGCAAGA
TCTACCTGAGACCTGCCATCTGTGACAAGGCCCGGCAGAAGCAGCAGCGGAAACGCTGTCCCAACTGTGA
CGGGCCTCTGAAGCTCATCCCTTGCCGAGGTCATGGGGGCTTCCCGGTCACCAACTTCTGGAGGCACGAC
GGACGCTTTATATTTTTCCAGTCAAAGGGAGAGCATGATCATCCAAAACCAGAAACCAAGTTAGAAGCTG
AGGCAAGAAGAGCCATGAAGAAAGTGAACACAGCACCTTCCTCCGTCTCATTGAGCCTGAAGGGGAGCAC
AGAGACCAGGTCTCTTCCAGGTGAAACACAAAGTCAGGGGAGTTTACCTTTAACTTGGTCTTTCCAGGAA
GGCGTCCAATTGCCTGGTAGTTACAGTGGACATTTAATAGCTAACACTCCTCAGCAGAACTCACTAAATG
ATTGCTTTTCCTTCTCCAAGAGTTATGGTCTGGGAGGAATCACAGATCTGACTGACCAGACTTCCACTGT
GGACCCCATGAAGCTCTATGAAAAGCGCAAATTGTCCAGTAGCAGAACCTACAGTAGTGGAGACCTGCTT
CCTCCTTCTGCCTCCGGAGTCTACTCTGATCATGGCGATCTACAAGCGTGGAGTAAAAATGCTGCTTTGG
GGAGAAATCATCTTGCTGACAACTGTTATTCCAATTATCCTTTTCCTCTGACCAGCTGGCCTTGCAGCTT
CTCTCCTTCCCAAAACTCTTCAGAACCCTTTTACCAGCAGCTTCCATTGGAGCCACCTGCAGCCAAAACT
GGCTGTCCCCCATTATGGCCAAATCCAGCGGGTAATCTTTATGAAGAGAAAGTACATGTGGATTTTAACA
GCTACGTCCAGTCTCCTGCATACCATTCACCTCAAGAAGACCCCTTTCTCTTCACCTACGCCTCTCATCC
TCATCAGCAATATTCACTGCCAAGCAAGAGCAGCAAATGGGATTTTGAGGAAGAAATGACATACTTGGGT
TTGGATCACTGCAACAATGATATGCTTCTGAACCTGTGTCCTTTGAGATGA

Translation (436 aa):
MEPDDFDSEDKEILSWDINDVKLPQNVKKTDWFQEWPDSYAKHIYSSEDKNAQRHLSSWAMRNTNNHNSR
ILKKSCLGVVVCGRDCLAEEGRKIYLRPAICDKARQKQQRKRCPNCDGPLKLIPCRGHGGFPVTNFWRHD
GRFIFFQSKGEHDHPKPETKLEAEARRAMKKVNTAPSSVSLSLKGSTETRSLPGETQSQGSLPLTWSFQE
GVQLPGSYSGHLIANTPQQNSLNDCFSFSKSYGLGGITDLTDQTSTVDPMKLYEKRKLSSSRTYSSGDLL
PPSASGVYSDHGDLQAWSKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKT
GCPPLWPNPAGNLYEEKVHVDFNSYVQSPAYHSPQEDPFLFTYASHPHQQYSLPSKSSKWDFEEEMTYLG
LDHCNNDMLLNLCPLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH