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Report for CCDS47690.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47690.1 Public Homo sapiens 7 CPED1 24 110 108 CCDS HistoryNCBI Gene:79974Re-query CCDS DB by CCDS ID:47690.1Re-query CCDS DB by GeneID:79974See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47690.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000450913.6 ENSP00000406122.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000450913.6Link to Ensembl Protein Viewer:ENSP00000406122.2Re-query CCDS DB by Nucleotide ID:ENST00000450913Re-query CCDS DB by Protein ID:ENSP00000406122
Original member Current member NCBI NM_001105533.1 NP_001099003.1 Accepted alive Link to Nucleotide Sequence:NM_001105533.1Link to Protein Sequence:NP_001099003.1Re-query CCDS DB by Nucleotide ID:NM_001105533Re-query CCDS DB by Protein ID:NP_001099003Link to BLAST:NP_001099003.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001099003.1 783 A4D0V7-2 783 100% 0 0

Chromosomal Locations for CCDS 47690.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 120989622 120989870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121015665 121015848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121046887 121046993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121064238 121064313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121097699 121097831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121099926 121100094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121124331 121124473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121125820 121125892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121127090 121127257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121128382 121128486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121130125 121130294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121133823 121133893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121136040 121136090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121140827 121141013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121141973 121142141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121236714 121236831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121244202 121244338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121261632 121261673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2352 nt):
ATGGTCTGTCGCCCAGTGTTCCCTTGTCGTCGGCGATTTTGCCCCCGACCCTTCTTGGTGGGCTTAGTGG
TGGCAATCTGTCTCTTCTACCAGACTCTGACCCTCCGAGGGTCGAGGAAGCTCACAGCCGCTGCCCCTGG
GGCTGTCCCACACACATCCACTGAAACCCAGGCAAGCAGATGCAAGAAAGGATTCTCTCAGGACAAACAG
TGCTTCCTTCTCTCTGGTAATGCCCAGGAAACCAGAAAGGTCAAAGAATCAATGGAGACACACTTTGGCA
GCCATGGCCGAAGGGCCATACTCTACAGGCCTCCTTTCTACAGCAAAACAGAGCTTCAGCTACACCAGCA
CATTCTGACTCAACATGGCTATACGGTTGTCATCGCTGAAGAAAGGCTCAATGCTGGCCTAGGGCCGGGG
CTACTAGAACAAGGTGATCTGGGCTCTTGGGATCTGCTCATTTGCCTGTCTTCTAAGAAAGCAGAAGGAA
CACCCTGTATATCCAAGGAAGTCATGTGCCAGTTAGGTTTACATCAAAAGGCAAACAGATTACCAGAAAT
ACAGCAGCCACTTTGCAGAAAGGAAGGATTATGTCAAATAGTTAGAAGATTCCCAGAACTGCAACTTCCA
GTGAGTCCCTCTGTGTGTCTGGATCAGGGAATGCAATTAAAGCCGAGTACTTCGAGTCACCTTTTAAAAA
CAGTGAAGCCACGTGTGTGGAAACCAGGGGACTGGAGTCGTGAACAGCTGAATGAAACGACAGTCCTTGC
TCCACATGAAACAATCTTTCGAGCCGAAGATCTATCTGTGATTCTTAAAGCGTATGTGTTGGTGACGTCC
TTAACCCCTTTGCGTGCATTCATTCATTCGACGGGCACAGTTTGGAATCCACCAAAGAAAAAACGCTTCA
CTGTCAAGCTGCAAACATTTTTTGAGACATTCCTGAGAGCCAGTTCACCTCAACAGGCTTTTGACATTAT
GAAGGAAGCAATTGGCAAACTACTGCTAGCGGCTGAAGTATTCAGTGAAACATCTACTCTGGGACCAAAG
ACCTTCCATAGATGCAGATTCTGCTTTCAACTTCTAACTTTTGATATTGGTTATGGCAGTTTCATGTACC
CTGTAGTGCTCCAGGTACACGAGCATTTAAATTTTCAAGATTATGATAATATGGATTTTGAGGACCAAAA
TACAGAAGAATTCCTTTTAAATGACACTTTCAATTTTCTCTTCCCTAATGAATCATCACTTTCCATATTT
TCTGAGATATTTCAGAGACTTTATAGATCAGATGTTTTCAAGGGTGAAAACTATCAAAAGGAACTAAATC
AGTGTCTGTCCTTAGAAGAAATTAACTCAATTATGACTTTCATAAAGGAACTTGGAAGTCTGGGACAATT
CCAACTGCTCTTCCCATCTACTACTCCTGGGATTCAGTCACTGATGCATGAATTTTATGATGTGGCAAAT
CCTGTGGGAAATCCTGGCTCAGTCCTGACCCAATACTGGTCTCTTTTAAATGTATTTGAACAATTTCAGT
TCATGAATAAAAAGACACAGCCACATCCACTGGAATGGAATTCTTTCACAGAAGATAAGAACATTGAAAA
ACCACAAGTGCCATTTGATGCAATAGAAAATAAAAAAGCTGCAGTTCCACAAATTAAAAATGAAAATAAA
GAAATACATTGCAGTGATGATGAAAACACACCATGTCATATCAAGCAGATCTTCACACATCCACATTTGG
AACTAAATCCTGACTTTCATCCAAAGATCAAAGATTATTACTGTGAAGTCCCATTTGATGTGGTAACAGT
GACAATTGGAGTGGAAACTCCTAAGTGTCTGTGCAAGGTGCACCTGTACGAGCAGGCAGGGCCAAGCTTT
GCCAGCTACCCTCTGGGCTTAGGAATGAACAAAATCTCAATATTTGTTGTGGATGAATCTCCAGCACACG
GTGAGACTCTGATCACGTACAAACTCACCATCTATAGAGAAGACCGCCCAAGTCTGCCCTTGTTTGAGGC
CTTCACAGCATGTGGTTTTGTGCAGGATTGTGGTTTGCTGATTCATCCAGAGGAAACCTGTGGGTTACAG
CCTATTTCTTCTGACTACATTGAAGCCATTTTACAGTCTGAACTAAAAAGATGTCCATCTGGGGACATGA
AAGGCCAGTGGATTGTGCCTTGCCTTAGTTGTTCGGACAACAGGACGTGTGACTGGAGAGAAATAACCTG
GCAGCCCCACAACTGCCAATATGGTGTCCTAACTAAGCCTCAACTCCAGCAGTGCCTGGGAGGAAGGAAG
TTGGGTGTCGATGTCCAGAGAGTTCCTAGAAGCCGTAATTGA

Translation (783 aa):
MVCRPVFPCRRRFCPRPFLVGLVVAICLFYQTLTLRGSRKLTAAAPGAVPHTSTETQASRCKKGFSQDKQ
CFLLSGNAQETRKVKESMETHFGSHGRRAILYRPPFYSKTELQLHQHILTQHGYTVVIAEERLNAGLGPG
LLEQGDLGSWDLLICLSSKKAEGTPCISKEVMCQLGLHQKANRLPEIQQPLCRKEGLCQIVRRFPELQLP
VSPSVCLDQGMQLKPSTSSHLLKTVKPRVWKPGDWSREQLNETTVLAPHETIFRAEDLSVILKAYVLVTS
LTPLRAFIHSTGTVWNPPKKKRFTVKLQTFFETFLRASSPQQAFDIMKEAIGKLLLAAEVFSETSTLGPK
TFHRCRFCFQLLTFDIGYGSFMYPVVLQVHEHLNFQDYDNMDFEDQNTEEFLLNDTFNFLFPNESSLSIF
SEIFQRLYRSDVFKGENYQKELNQCLSLEEINSIMTFIKELGSLGQFQLLFPSTTPGIQSLMHEFYDVAN
PVGNPGSVLTQYWSLLNVFEQFQFMNKKTQPHPLEWNSFTEDKNIEKPQVPFDAIENKKAAVPQIKNENK
EIHCSDDENTPCHIKQIFTHPHLELNPDFHPKIKDYYCEVPFDVVTVTIGVETPKCLCKVHLYEQAGPSF
ASYPLGLGMNKISIFVVDESPAHGETLITYKLTIYREDRPSLPLFEAFTACGFVQDCGLLIHPEETCGLQ
PISSDYIEAILQSELKRCPSGDMKGQWIVPCLSCSDNRTCDWREITWQPHNCQYGVLTKPQLQQCLGGRK
LGVDVQRVPRSRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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