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Report for CCDS46733.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46733.1 Public Homo sapiens 22 SYCE3 24 110 108 CCDS HistoryNCBI Gene:644186Re-query CCDS DB by CCDS ID:46733.1Re-query CCDS DB by GeneID:644186See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46733.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000402753.1 ENSP00000385122.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402753.1Link to Ensembl Protein Viewer:ENSP00000385122.1Re-query CCDS DB by Nucleotide ID:ENST00000402753Re-query CCDS DB by Protein ID:ENSP00000385122
Original member Current member EBI ENST00000406915.4 ENSP00000385480.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000406915.4Link to Ensembl Protein Viewer:ENSP00000385480.3Re-query CCDS DB by Nucleotide ID:ENST00000406915Re-query CCDS DB by Protein ID:ENSP00000385480
Original member Current member NCBI NM_001123225.3 NP_001116697.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001123225.3Link to Protein Sequence:NP_001116697.1Re-query CCDS DB by Nucleotide ID:NM_001123225Re-query CCDS DB by Protein ID:NP_001116697Link to BLAST:NP_001116697.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116697.1 88 A1L190 88 100% 0 0

Chromosomal Locations for CCDS 46733.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 50551245 50551402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50556297 50556405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (267 nt):
ATGGATGATGCTGACCCTGAGGAAAGAAACTATGACAACATGCTGAAAATGCTGTCAGATCTGAATAAGG
ACTTGGAAAAGCTATTAGAAGAGATGGAGAAAATCTCAGTGCAGGCGACCTGGATGGCCTATGACATGGT
GGTGATGCGCACCAACCCTACGCTGGCCGAGTCCATGCGTCGGCTGGAGGATGCCTTCGTCAACTGCAAG
GAGGAGATGGAGAAGAACTGGCAAGAGCTGCTGCATGAGACCAAGCAAAGGCTGTAG

Translation (88 aa):
MDDADPEERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFVNCK
EEMEKNWQELLHETKQRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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