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Report for CCDS43979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43979.1 Public Homo sapiens X NXF2B 24 110 108 CCDS HistoryNCBI Gene:728343Re-query CCDS DB by CCDS ID:43979.1Re-query CCDS DB by GeneID:728343See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43979.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000602195.6 ENSP00000472530.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000602195.6Link to Ensembl Protein Viewer:ENSP00000472530.1Re-query CCDS DB by Nucleotide ID:ENST00000602195Re-query CCDS DB by Protein ID:ENSP00000472530
Original member Current member EBI ENST00000604395.5 ENSP00000474659.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000604395.5Link to Ensembl Protein Viewer:ENSP00000474659.2Re-query CCDS DB by Nucleotide ID:ENST00000604395Re-query CCDS DB by Protein ID:ENSP00000474659
Original member Current member NCBI NM_001099686.3 NP_001093156.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099686.3Link to Protein Sequence:NP_001093156.1Re-query CCDS DB by Nucleotide ID:NM_001099686Re-query CCDS DB by Protein ID:NP_001093156Link to BLAST:NP_001093156.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093156.1 626 Q9GZY0 626 100% 0 0

Chromosomal Locations for CCDS 43979.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 102360601 102360645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102360792 102360852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102363263 102363445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102363980 102364052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102364653 102364695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102364791 102364906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102365045 102365103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102365224 102365331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102365463 102365518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102365605 102365673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102366054 102366090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102367769 102367878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102368058 102368165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102368286 102368374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102368531 102368600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102368787 102368867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102368983 102369087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102369199 102369282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102369586 102369736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102369963 102370152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102379994 102380036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1881 nt):
ATGTGCTCTACTCTAAAGAAGTGTGGGACATACAGAACTGAAGTTGCAGAATGCCATGACCATGGTAGCA
CTTTTCAAGGAAGAAAGAAAGGTGGGAGTTCTTTCCGGGATAATTTTGACAAGAGGAGCTGTCATTATGA
ACATGGTGGGTATGAGCGCCCGCCTTCACACTGCCAGGAGAATGATGGAAGCGTGGAGATGAGGGATGTC
CACAAGGACCAACAACTAAGACACACTCCTTATAGCATCCGATGCGAAAGAAGAATGAAATGGCATAGTG
AAGACGAAATCCGTATTACCACGTGGAGAAATAGAAAACCTCCGGAGAGAAAAATGAGTCAGAACACACA
GGATGGATACACAAGGAACTGGTTTAAGGTCACAATTCCTTACGGGATAAAGTATGACAAGGCATGGCTA
ATGAATTCAATCCAGAGCCATTGCAGTGACCGCTTCACTCCGGTTGATTTCCACTACGTCCGAAATCGGG
CATGCTTCTTTGTCCAGGATGCTAGCGCTGCCTCCGCATTGAAGGATGTCAGTTATAAGATTTATGATGA
TGAGAACCAAAAGATATGTATATTTGTCAATCATTCTACTGCGCCCTACTCTGTGAAGAATAAGTTGAAG
CCAGGCCAAATGGAGATGCTAAAGCTGACCATGAACAAACGGTACAATGTCTCCCAGCAAGCTCTTGATC
TCCAGAATCTCCGCTTTGACCCAGACTTGATGGGCCGTGACATTGATATAATCCTGAATCGAAGAAACTG
CATGGCTGCCACCCTGAAGATCATTGAAAGAAATTTCCCTGAGCTGTTGTCTTTGAACTTGTGCAACAAC
AAGCTGTACCAGCTGGATGGCCTTTCTGACATTACAGAGAAGGCTCCCAAAGTCAAGACCCTGAATCTCT
CCAAAAATAAGCTGGAGTCGGCGTGGGAGTTGGGCAAGGTGAAAGGGCTGAAGCTCGAAGAGCTATGGCT
AGAAGGGAACCCGTTGTGCAGCACCTTCTCGGACCAGTCCGCCTATGTAAGTGCCATCCGGGATTGTTTC
CCCAAGTTGTTACGCCTGGACGGCCGAGAGTTATCCGCACCAGTGATTGTTGACATTGACAGCTCTGAGA
CAATGAAACCCTGCAAGGAAAACTTTACTGGATCTGAGACCCTAAAGCATTTAGTCCTGCAATTCCTGCA
GCAGTATTACTCGATCTATGACTCTGGAGATCGACAGGGTCTCCTCGGTGCTTACCACGATGAGGCCTGC
TTCTCCTTGGCTATTCCCTTCGACCCCAAGGACTCAGCCCCGAGCAGCTTGTGCAAGTACTTTGAGGATA
GCAGGAATATGAAAACACTCAAGGACCCCTACCTGAAGGGGGAACTGCTGAGGCGCACAAAACGTGACAT
TGTGGACTCCCTCAGTGCGTTGCCCAAAACTCAGCATGACCTCAGCTCCATCCTGGTGGACGTGTGGTGC
CAGACGGAAAGGATGCTCTGCTTTTCTGTCAATGGGGTTTTCAAGGAAGTGGAAGGACAGTCTCAGGGTT
CTGTTCTCGCCTTCACCCGGACCTTCATTGCTACCCCTGGCAGCAGTTCCAGTCTGTGCATCGTGAATGA
CGAGCTGTTTGTGAGGGATGCCAGCCCCCAAGAGACTCAGAGTGCCTTCTCCATCCCAGTGTCCACACTC
TCCTCCAGCTCTGAGCCCTCCCTCTCCCAGGAGCAGCAGGAAATGGTGCAGGCTTTCTCTGCCCAGTCTG
GGATGAAACTGGAGTGGTCTCAGAAGTGCCTTCAGGACAATGAGTGGAACTACACTAGAGCTGGCCAGGC
CTTCACTATGCTCCAGACCGAGGGCAAGATCCCCGCGGAGGCCTTCAAGCAAATCTCCTAA

Translation (626 aa):
MCSTLKKCGTYRTEVAECHDHGSTFQGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQENDGSVEMRDV
HKDQQLRHTPYSIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGYTRNWFKVTIPYGIKYDKAWL
MNSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDVSYKIYDDENQKICIFVNHSTAPYSVKNKLK
PGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNN
KLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCF
PKLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEAC
FSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHDLSSILVDVWC
QTERMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELFVRDASPQETQSAFSIPVSTL
SSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWNYTRAGQAFTMLQTEGKIPAEAFKQIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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