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Report for CCDS41766.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41766.2 Public Homo sapiens 12 CAPRIN2 24 110 108 CCDS HistoryNCBI Gene:65981Re-query CCDS DB by CCDS ID:41766.2Re-query CCDS DB by GeneID:65981See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 41766.2
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 41766.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000417045.5 ENSP00000391479.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000417045.5Link to Ensembl Protein Viewer:ENSP00000391479.1Re-query CCDS DB by Nucleotide ID:ENST00000417045Re-query CCDS DB by Protein ID:ENSP00000391479
Original member Current member NCBI NM_032156.5 NP_115532.3 Accepted alive Link to Nucleotide Sequence:NM_032156.5Link to Protein Sequence:NP_115532.3Re-query CCDS DB by Nucleotide ID:NM_032156Re-query CCDS DB by Protein ID:NP_115532Link to BLAST:NP_115532.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115532.3 960 Q6IMN6-3 960 100% 0 0

Chromosomal Locations for CCDS 41766.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 30710444 30710514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30711566 30711629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30713785 30713885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30714959 30715141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30716508 30716676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30719079 30719225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30720811 30720915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30723259 30723314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30724370 30724451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30725966 30726088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30728648 30729325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30730239 30730282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30731343 30731510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30733629 30733711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30734968 30735206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30741020 30741106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30751071 30751133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30753344 30753763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2883 nt):
ATGGAAGTACAAGTATCTCAAGCATCATTGGGTTTCGAGCTCACTTCTGTGGAAAAGAGTTTAAGGGAGT
GGTCTAGACTTTCCAGGGAAGTTATTGCCTGGCTGTGTCCCTCTAGTCCTAATTTTATACTTAACTTTCC
CCCACCTCCTTCAGCCTCATCTGTTTCAATGGTGCAACTCTTTTCATCCCCTTTTGGTTACCAGTCACCT
TCAGGCCATTCAGAGGAGGAAAGAGAGGGGAATATGAAGTCAGCCAAGCCCCAAGTGAACCACAGTCAGC
ATGGGGAAAGCCAGCGGGCCTTGAGCCCCCTGCAGTCTACTCTGAGTTCTGCTGCATCTCCTTCCCAAGC
GTATGAGACCTATATTGAAAATGGACTCATATGCCTTAAACACAAAATTAGAAACATCGAGAAAAAGAAG
CTCAAACTGGAGGATTATAAGGATCGCCTGAAAAGTGGAGAGCATCTTAATCCAGACCAGTTGGAAGCTG
TAGAGAAATATGAAGAAGTGCTACATAATTTGGAATTTGCCAAGGAGCTTCAAAAAACCTTTTCTGGGTT
GAGCCTAGATCTACTAAAAGCGCAAAAGAAGGCCCAGAGAAGGGAGCACATGCTAAAACTTGAGGCTGAG
AAGAAAAAGCTTCGAACTATACTTCAAGTTCAGTATGTATTGCAGAACTTGACACAGGAGCACGTACAAA
AAGACTTCAAAGGGGGTTTGAATGGTGCAGTGTATTTGCCTTCAAAAGAACTTGACTACCTCATTAAGTT
TTCAAAACTGACCTGCCCTGAAAGAAATGAAAGTCTGAGTGTTGAAGACCAGATGGAGCAGTCATCCTTG
TACTTTTGGGACCTTTTGGAAGGTAGTGAGAAAGCAGTGGTAGGAACGACATACAAACACTTGAAGGATC
TACTGTCTAAATTGCTGAACTCAGGCTATTTTGAAAGTATCCCAGTTCCCAAAAATGCCAAGGAAAAGGA
AGTACCACTGGAGGAAGAAATGCTAATACAATCAGAGAAAAAAACACAATTATCGAAGACTGAATCTGTC
AAAGAGTCAGAGTCTCTAATGGAATTTGCCCAGCCAGAGATACAACCACAAGAGTTTCTTAACAGACGCT
ATATGACAGAAGTAGATTATTCAAACAAACAAGGCGAAGAGCAACCTTGGGAAGCAGATTATGCTAGAAA
ACCAAATCTCCCAAAACGTTGGGATATGCTTACTGAACCAGATGGTCAAGAGAAGAAACAGGAGTCCTTT
AAGTCCTGGGAGGCTTCTGGTAAGCACCAGGAGGTATCCAAGCCTGCAGTTTCCTTAGAACAGAGGAAAC
AAGACACCTCAAAACTCAGGTCTACTCTGCCGGAAGAGCAGAAGAAGCAGGAGATCTCCAAATCCAAGCC
ATCTCCTAGCCAGTGGAAGCAAGATACACCTAAATCCAAAGCAGGGTATGTTCAAGAGGAACAAAAGAAA
CAGGAGACACCAAAGCTGTGGCCAGTTCAGCTGCAGAAAGAACAAGATCCAAAGAAGCAAACTCCAAAGT
CTTGGACACCTTCCATGCAGAGCGAACAGAACACCACCAAGTCATGGACCACTCCCATGTGTGAAGAACA
GGATTCAAAACAGCCAGAGACTCCAAAATCCTGGGAAAACAATGTTGAGAGTCAAAAACACTCTTTAACA
TCACAGTCACAGATTTCTCCAAAGTCCTGGGGAGTAGCTACAGCAAGCCTCATACCAAATGACCAGCTGC
TGCCCAGGAAGTTGAACACAGAACCCAAAGATGTGCCTAAGCCTGTGCATCAGCCTGTAGGTTCTTCCTC
TACCCTTCCGAAGGATCCAGTATTGAGGAAAGAAAAACTGCAGGATCTGATGACTCAGATTCAAGGAACT
TGTAACTTTATGCAAGAGTCTGTTCTTGACTTTGACAAACCTTCAAGTGCAATTCCAACGTCACAACCGC
CTTCAGCTACTCCAGGTAGCCCCGTAGCATCTAAAGAACAAAATCTGTCCAGTCAAAGTGATTTTCTTCA
AGAGCCGTTACAGGCTACTTCTTCTCCAGTTACTTGTAGCTCAAATGCTTGCTTGGTTACTACCGATCAG
GCTTCTTCTGGATCTGAAACAGAGTTTATGACCTCAGAGACTCCTGAGGCAGCAATTCCCCCAGGCAAGC
AACCGTCTTCACTAGCTTCTCCAAATCCTCCCATGGCAAAGGGCTCTGAACAGGGCTTCCAGTCACCTCC
AGCAAGTAGTAGTTCAGTAACCATTAACACAGCACCCTTTCAAGCCATGCAGACAGTATTTAACGTTAAT
GCACCTCTGCCTCCACGAAAAGAACAAGAAATAAAAGAATCCCCTTATTCACCTGGCTACAATCAAAGTT
TTACCACAGCAAGTACACAAACACCACCCCAGTGCCAACTGCCATCTATACATGTAGAACAAACTGTCCA
TTCTCAAGAGACTGCAAATTATCATCCTGATGGAACTATTCAAGTAAGCAATGGTAGCCTTGCCTTTTAC
CCAGCACAGACGAATGTGTTTCCCAGACCTACTCAGCCATTTGTCAATAGCCGGGGATCTGTTAGAGGAT
GTACTCGTGGTGGGAGATTAATAACCAATTCCTATCGGTCCCCTGGTGGTTATAAAGGTTTTGATACTTA
TAGAGGACTCCCTTCAATTTCCAATGGAAATTATAGCCAGCTGCAGTTCCAAGCTAGAGAGTATTCTGGA
GCACCTTATTCCCAAAGGGATAATTTCCAGCAGTGTTATAAGCGAGGAGGGACATCTGGTGGTCCACGAG
CAAATTCGAGAGCTAACTGCTTCATTATGAGAAACTCACTGTTGCTAATAAAACAGCAGGGTGGAGTGAT
TCTTCTCAGGTGA

Translation (960 aa):
MEVQVSQASLGFELTSVEKSLREWSRLSREVIAWLCPSSPNFILNFPPPPSASSVSMVQLFSSPFGYQSP
SGHSEEEREGNMKSAKPQVNHSQHGESQRALSPLQSTLSSAASPSQAYETYIENGLICLKHKIRNIEKKK
LKLEDYKDRLKSGEHLNPDQLEAVEKYEEVLHNLEFAKELQKTFSGLSLDLLKAQKKAQRREHMLKLEAE
KKKLRTILQVQYVLQNLTQEHVQKDFKGGLNGAVYLPSKELDYLIKFSKLTCPERNESLSVEDQMEQSSL
YFWDLLEGSEKAVVGTTYKHLKDLLSKLLNSGYFESIPVPKNAKEKEVPLEEEMLIQSEKKTQLSKTESV
KESESLMEFAQPEIQPQEFLNRRYMTEVDYSNKQGEEQPWEADYARKPNLPKRWDMLTEPDGQEKKQESF
KSWEASGKHQEVSKPAVSLEQRKQDTSKLRSTLPEEQKKQEISKSKPSPSQWKQDTPKSKAGYVQEEQKK
QETPKLWPVQLQKEQDPKKQTPKSWTPSMQSEQNTTKSWTTPMCEEQDSKQPETPKSWENNVESQKHSLT
SQSQISPKSWGVATASLIPNDQLLPRKLNTEPKDVPKPVHQPVGSSSTLPKDPVLRKEKLQDLMTQIQGT
CNFMQESVLDFDKPSSAIPTSQPPSATPGSPVASKEQNLSSQSDFLQEPLQATSSPVTCSSNACLVTTDQ
ASSGSETEFMTSETPEAAIPPGKQPSSLASPNPPMAKGSEQGFQSPPASSSSVTINTAPFQAMQTVFNVN
APLPPRKEQEIKESPYSPGYNQSFTTASTQTPPQCQLPSIHVEQTVHSQETANYHPDGTIQVSNGSLAFY
PAQTNVFPRPTQPFVNSRGSVRGCTRGGRLITNSYRSPGGYKGFDTYRGLPSISNGNYSQLQFQAREYSG
APYSQRDNFQQCYKRGGTSGGPRANSRANCFIMRNSLLLIKQQGGVILLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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