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Report for CCDS41759.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41759.1 Public Homo sapiens 12 SMCO3 24 110 108 CCDS HistoryNCBI Gene:440087Re-query CCDS DB by CCDS ID:41759.1Re-query CCDS DB by GeneID:440087See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41759.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316048.2 ENSP00000381895.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316048.2Link to Ensembl Protein Viewer:ENSP00000381895.1Re-query CCDS DB by Nucleotide ID:ENST00000316048Re-query CCDS DB by Protein ID:ENSP00000381895
Original member Current member NCBI NM_001013698.2 NP_001013720.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001013698.2Link to Protein Sequence:NP_001013720.2Re-query CCDS DB by Nucleotide ID:NM_001013698Re-query CCDS DB by Protein ID:NP_001013720Link to BLAST:NP_001013720.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013720.2 225 A2RU48 225 100% 0 0

Chromosomal Locations for CCDS 41759.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 14806003 14806680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGGCCCAAAGTGACTTCCTTTACCCAGAGAACCCAAAAAGGCGGGAAGAAGTAAATCGTCTTCACCAGC
AGCTTCTTGATTGCTTATCTGACAGCTTCGATGTCACCAATAAGCTGACTGAGGTTCTAAATATGCACTT
GGGGTGCAGGCTGGCCTCCATTGAGATGAAAAGAGATGGGACCATCAAAGAAAACTGTGACCTCATCATC
CAAGCCATTATGAAAATCCAAAAGGAATTGCAGAAGGTTGATGAAGCACTAAAAGATAAGCTAGAGCCAA
CCCTCTATAGAAAACTTCAGGATATTAAGGAAAAGGAAACAGACAAAATTGCAATAGTGCAAAAGGTTAT
TTCGGTCATCCTGGGAGAAGCTACATCTGCAGCCAGTGCAGTCGCTGTTAAACTTGTGGGCTCAAATGTC
ACAACTGGCATAATTAACAAGTTGGTCACTGTGTTAGCTCAAATTGGTGCTTCTCTCCTTGGTAGTATTG
GAGTTGCTGTTCTTGGCCTTGGCATAGATATGATTGTCCGTGCCATCCTGGGAGCAGTGGAAAAAACACA
GCTTCAAGCAGCCATCAAAAGTTATGAGAAGCATCTGGTGGAGTTCAAATCAGCCTCAGAAAAATATAAT
CATGCCATTACTGAGGTCATCAATACAGTGAAACACCAAATGAAATGA

Translation (225 aa):
MAQSDFLYPENPKRREEVNRLHQQLLDCLSDSFDVTNKLTEVLNMHLGCRLASIEMKRDGTIKENCDLII
QAIMKIQKELQKVDEALKDKLEPTLYRKLQDIKEKETDKIAIVQKVISVILGEATSAASAVAVKLVGSNV
TTGIINKLVTVLAQIGASLLGSIGVAVLGLGIDMIVRAILGAVEKTQLQAAIKSYEKHLVEFKSASEKYN
HAITEVINTVKHQMK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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