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Report for CCDS4075.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4075.1 Public Homo sapiens 5 RFESD 24 110 108 CCDS HistoryNCBI Gene:317671Re-query CCDS DB by CCDS ID:4075.1Re-query CCDS DB by GeneID:317671See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4075.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311364.8 ENSP00000309229.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000311364.8Link to Ensembl Protein Viewer:ENSP00000309229.4Re-query CCDS DB by Nucleotide ID:ENST00000311364Re-query CCDS DB by Protein ID:ENSP00000309229
Original member Current member NCBI NM_001375394.1 NP_001362323.1 Accepted alive Link to Nucleotide Sequence:NM_001375394.1Link to Protein Sequence:NP_001362323.1Re-query CCDS DB by Nucleotide ID:NM_001375394Re-query CCDS DB by Protein ID:NP_001362323Link to BLAST:NP_001362323.1
Original member Current member NCBI NM_173362.3 NP_775498.1 Accepted alive Link to Nucleotide Sequence:NM_173362.3Link to Protein Sequence:NP_775498.1Re-query CCDS DB by Nucleotide ID:NM_173362Re-query CCDS DB by Protein ID:NP_775498Link to BLAST:NP_775498.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362323.1 157 Q8TAC1-1 157 100% 0 0
NP_775498.1 157 Q8TAC1-1 157 100% 0 0

Chromosomal Locations for CCDS 4075.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 95654062 95654236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95654333 95654367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95656046 95656309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (474 nt):
ATGAATCTTGATGGCTCTGCACAAGATCCTGAAAAGAGGGAATATTCTTCTGTGTGTGTGGGCAGAGAAG
ATGACATTAAAAAATCTGAAAGAATGACAGCTGTTGTCCATGATAGAGAAGTGGTCATTTTCTACCACAA
GGGAGAATATCATGCTATGGATATTCGCTGTTACCACTCAGGAGGACCTTTACATTTGGGAGATATAGAG
GATTTTGATGGACGACCGTGTATAGTTTGCCCCTGGCATAAATACAAAATTACTTTGGCAACAGGAGAAG
GTCTGTACCAGTCTATAAACCCTAAAGATCCATCAGCAAAACCCAAGTGGTGCTCCAAAGGAATAAAGCA
AAGGATTCACACAGTGACAGTAGACAACGGAAATATTTATGTGACTCTTTCTAATGAACCTTTTAAGTGT
GACTCTGATTTTTATGCCACTGGAGACTTCAAAGTAATTAAGAGTTCTTCCTGA

Translation (157 aa):
MNLDGSAQDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLGDIE
DFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIHTVTVDNGNIYVTLSNEPFKC
DSDFYATGDFKVIKSSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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