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Report for CCDS3734.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3734.1 Public Homo sapiens 4 HSPA4L 24 110 108 CCDS HistoryNCBI Gene:22824Re-query CCDS DB by CCDS ID:3734.1Re-query CCDS DB by GeneID:22824See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3734.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296464.9 ENSP00000296464.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296464.9Link to Ensembl Protein Viewer:ENSP00000296464.3Re-query CCDS DB by Nucleotide ID:ENST00000296464Re-query CCDS DB by Protein ID:ENSP00000296464
Original member Current member EBI ENST00000508776.5 ENSP00000422482.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000508776.5Link to Ensembl Protein Viewer:ENSP00000422482.1Re-query CCDS DB by Nucleotide ID:ENST00000508776Re-query CCDS DB by Protein ID:ENSP00000422482
Original member Current member NCBI NM_014278.4 NP_055093.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014278.4Link to Protein Sequence:NP_055093.2Re-query CCDS DB by Nucleotide ID:NM_014278Re-query CCDS DB by Protein ID:NP_055093Link to BLAST:NP_055093.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055093.2 839 O95757 839 100% 0 0

Chromosomal Locations for CCDS 3734.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 127782551 127782657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127794077 127794134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127795768 127795908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127798587 127798709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127801138 127801237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127801785 127801918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127803629 127803873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127804011 127804087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127805073 127805224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127805687 127805793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127807996 127808129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127811437 127811636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127818325 127818420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127820428 127820565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127822769 127822894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127823517 127823624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127827305 127827424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127830638 127830799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127832683 127832874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2520 nt):
ATGTCTGTGGTTGGCATTGACCTCGGCTTTCTCAACTGCTACATTGCTGTCGCGAGAAGTGGCGGCATCG
AGACCATCGCCAATGAGTACAGCGACAGGTGTACCCCGGCCTGTATATCATTGGGATCAAGAACTCGAGC
CATTGGAAATGCAGCAAAGAGCCAGATAGTCACGAACGTAAGAAATACAATTCATGGCTTCAAAAAGCTT
CATGGGCGATCATTTGATGATCCCATTGTGCAAACTGAAAGGATCAGGCTTCCCTATGAACTGCAGAAAA
TGCCTAATGGAAGTGCAGGAGTTAAGGTGCGGTACTTAGAGGAAGAGAGACCTTTTGCAATTGAGCAAGT
TACTGGAATGCTGTTAGCCAAGCTTAAAGAGACTTCAGAAAATGCTTTGAAGAAACCAGTGGCTGACTGT
GTGATTTCAATTCCTAGCTTTTTTACTGATGCCGAGAGAAGATCTGTGATGGCTGCAGCCCAGGTTGCAG
GCTTAAATTGTTTAAGGTTGATGAATGAAACTACTGCAGTTGCACTGGCGTATGGAATTTATAAACAGGA
TCTTCCCCCATTAGATGAGAAACCAAGAAATGTAGTATTTATTGATATGGGACATTCTGCCTATCAGGTC
TTGGTTTGTGCTTTTAACAAAGGAAAACTTAAAGTCTTGGCTACTACCTTTGATCCATATTTGGGTGGCA
GGAACTTTGATGAGGCTTTAGTAGACTACTTCTGTGATGAGTTCAAGACCAAATATAAGATAAATGTGAA
AGAAAACTCTCGGGCCTTGTTGCGTTTATATCAGGAATGTGAAAAACTAAAGAAGCTAATGAGTGCAAAT
GCATCAGATCTTCCATTGAACATTGAGTGTTTCATGAATGACCTTGATGTTTCTAGTAAAATGAACAGGG
CTCAATTTGAACAACTGTGTGCTTCCCTTTTGGCCAGGGTTGAACCACCTTTAAAAGCAGTAATGGAACA
AGCTAACTTACAACGTGAAGACATTAGTAGTATAGAAATTGTAGGAGGAGCAACACGAATTCCTGCAGTG
AAAGAACAAATCACTAAATTCTTTCTTAAAGACATAAGTACCACATTAAATGCTGATGAAGCTGTTGCAA
GAGGATGTGCGTTACAGTGTGCGATTCTCTCACCAGCATTTAAAGTGCGTGAATTTTCCATAACAGACCT
TGTTCCCTATTCAATCACATTAAGGTGGAAGACCTCTTTTGAAGATGGAAGTGGGGAATGTGAAGTTTTC
TGTAAGAACCATCCTGCCCCATTCTCAAAAGTCATTACTTTCCACAAGAAGGAACCATTTGAACTAGAAG
CATTTTATACTAATTTACATGAAGTGCCTTATCCTGATGCAAGAATTGGGAGCTTCACTATTCAGAATGT
TTTTCCACAGTCTGATGGTGATAGTTCCAAAGTGAAGGTTAAAGTTCGTGTTAACATCCATGGAATCTTC
AGTGTGGCTAGCGCATCAGTAATTGAGAAGCAAAATTTGGAAGGCGATCACAGTGATGCTCCAATGGAGA
CAGAAACTTCATTTAAAAATGAAAACAAAGATAATATGGATAAAATGCAGGTTGATCAAGAAGAAGGGCA
TCAAAAATGTCATGCTGAACACACTCCAGAAGAGGAAATTGATCATACAGGAGCCAAAACAAAGTCAGCT
GTCTCAGACAAACAAGACCGATTAAATCAGACACTTAAAAAAGGAAAAGTCAAAAGTATTGATCTACCGA
TCCAGAGTAGCCTATGTAGACAACTAGGCCAAGATCTTCTCAACAGCTACATTGAAAATGAGGGGAAGAT
GATCATGCAAGATAAGTTAGAGAAAGAAAGAAATGATGCTAAGAATGCCGTTGAAGAATATGTATATGAT
TTTAGAGACAGGCTGGGCACTGTCTATGAAAAATTCATCACTCCAGAAGACTTGAGTAAACTGTCTGCAG
TATTGGAAGACACAGAAAATTGGCTTTATGAAGACGGAGAGGACCAACCTAAACAAGTTTATGTGGATAA
GCTTCAAGAACTAAAGAAATACGGCCAGCCTATTCAAATGAAGTACATGGAGCATGAAGAGAGACCAAAA
GCCTTAAATGACTTGGGAAAAAAGATCCAACTTGTCATGAAAGTGATAGAAGCTTATAGAAACAAGGATG
AAAGATATGATCATCTGGATCCTACTGAAATGGAAAAGGTTGAAAAATGTATCAGTGATGCCATGAGTTG
GCTGAATAGTAAGATGAATGCACAGAACAAACTAAGTCTCACTCAAGATCCTGTGGTAAAAGTTTCAGAA
ATAGTAGCAAAGTCAAAGGAACTGGATAATTTCTGTAACCCCATCATTTACAAGCCCAAACCAAAAGCAG
AAGTTCCTGAAGACAAACCAAAAGCTAATAGTGAACACAATGGCCCAATGGATGGACAGAGTGGAACTGA
AACTAAATCAGATTCAACAAAAGACAGCTCACAGCATACTAAATCCTCTGGAGAGATGGAAGTGGACTAA

Translation (839 aa):
MSVVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSRTRAIGNAAKSQIVTNVRNTIHGFKKL
HGRSFDDPIVQTERIRLPYELQKMPNGSAGVKVRYLEEERPFAIEQVTGMLLAKLKETSENALKKPVADC
VISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAYGIYKQDLPPLDEKPRNVVFIDMGHSAYQV
LVCAFNKGKLKVLATTFDPYLGGRNFDEALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSAN
ASDLPLNIECFMNDLDVSSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDISSIEIVGGATRIPAV
KEQITKFFLKDISTTLNADEAVARGCALQCAILSPAFKVREFSITDLVPYSITLRWKTSFEDGSGECEVF
CKNHPAPFSKVITFHKKEPFELEAFYTNLHEVPYPDARIGSFTIQNVFPQSDGDSSKVKVKVRVNIHGIF
SVASASVIEKQNLEGDHSDAPMETETSFKNENKDNMDKMQVDQEEGHQKCHAEHTPEEEIDHTGAKTKSA
VSDKQDRLNQTLKKGKVKSIDLPIQSSLCRQLGQDLLNSYIENEGKMIMQDKLEKERNDAKNAVEEYVYD
FRDRLGTVYEKFITPEDLSKLSAVLEDTENWLYEDGEDQPKQVYVDKLQELKKYGQPIQMKYMEHEERPK
ALNDLGKKIQLVMKVIEAYRNKDERYDHLDPTEMEKVEKCISDAMSWLNSKMNAQNKLSLTQDPVVKVSE
IVAKSKELDNFCNPIIYKPKPKAEVPEDKPKANSEHNGPMDGQSGTETKSDSTKDSSQHTKSSGEMEVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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