NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS34937.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34937.1 Public Homo sapiens 8 TAF2 24 110 108 CCDS HistoryNCBI Gene:6873Re-query CCDS DB by CCDS ID:34937.1Re-query CCDS DB by GeneID:6873See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34937.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378164.7 ENSP00000367406.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378164.7Link to Ensembl Protein Viewer:ENSP00000367406.2Re-query CCDS DB by Nucleotide ID:ENST00000378164Re-query CCDS DB by Protein ID:ENSP00000367406
Original member Current member NCBI NM_003184.4 NP_003175.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003184.4Link to Protein Sequence:NP_003175.2Re-query CCDS DB by Nucleotide ID:NM_003184Re-query CCDS DB by Protein ID:NP_003175Link to BLAST:NP_003175.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003175.2 1199 Q6P1X5 1199 100% 0 0

Chromosomal Locations for CCDS 34937.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 119731924 119732186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119742534 119742656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119744288 119744393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119746705 119746934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119756006 119756115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119758073 119758142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119760599 119760738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119762415 119762608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119778019 119778129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119781053 119781193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119783381 119783633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119785201 119785266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119788338 119788447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119788790 119788904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119789592 119789746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119791324 119791459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119793366 119793451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119795532 119795631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119796990 119797103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119797662 119797846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119801794 119802025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119803878 119804019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119806283 119806401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119819346 119819506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119831677 119831731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119832482 119832564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3600 nt):
ATGCCGCTGACTGGTGTAGAGCCCGCCAGAATGAACAGGAAGAAAGGAGACAAGGGCTTTGAAAGCCCAA
GGCCATATAAATTAACCCATCAGGTCGTCTGCATCAACAACATAAATTTCCAGAGAAAATCTGTTGTGGG
ATTTGTGGAACTGACTATATTTCCCACAGTTGCAAACTTGAATAGAATCAAGTTGAACAGCAAACAGTGT
AGAATATACCGAGTAAGGATCAATGATTTAGAGGCTGCTTTTATTTATAATGACCCAACCTTGGAAGTTT
GTCACAGTGAATCAAAACAGAGAAACCTCAATTATTTTTCCAATGCTTATGCAGCTGCAGTTAGTGCTGT
GGACCCTGATGCAGGAAATGGAGAACTTTGCATTAAGGTTCCATCAGAGCTATGGAAACACGTTGATGAG
TTAAAGGTCCTGAAGATACACATCAATTTTTCTTTGGATCAGCCCAAAGGAGGTCTTCATTTTGTGGTAC
CCAGTGTAGAGGGAAGTATGGCAGAGAGAGGTGCTCATGTTTTCTCTTGTGGGTATCAAAATTCTACAAG
ATTTTGGTTCCCTTGTGTTGATTCATACTCTGAATTGTGTACATGGAAATTAGAATTTACAGTAGATGCT
GCAATGGTTGCTGTTTCTAATGGCGATTTGGTGGAGACAGTGTATACTCATGATATGAGGAAGAAAACTT
TCCATTATATGCTTACCATTCCTACAGCAGCGTCAAATATCTCCTTGGCCATTGGACCATTTGAAATACT
GGTAGATCCATACATGCATGAGGTTACTCATTTTTGTTTGCCCCAACTTCTTCCATTGCTGAAACATACC
ACATCATACCTTCATGAAGTCTTTGAATTTTATGAAGAAATTCTTACATGTCGTTACCCATACTCCTGTT
TTAAGACTGTCTTCATTGATGAGGCTTATGTTGAAGTGGCTGCTTATGCTTCCATGAGCATTTTTAGCAC
AAATCTTTTACACAGTGCCATGATTATAGATGAGACACCTTTGACTAGAAGGTGTTTAGCCCAATCCTTG
GCCCAGCAGTTTTTTGGTTGTTTCATATCTAGAATGTCTTGGTCTGATGAATGGGTGCTGAAGGGAATTT
CAGGCTATATCTATGGACTTTGGATGAAAAAAACTTTTGGTGTTAATGAGTACCGCCATTGGATTAAAGA
GGAGCTAGACAAAATAGTGGCATATGAACTAAAAACTGGTGGGGTTTTACTACATCCCATATTTGGTGGA
GGAAAAGAGAAGGATAATCCGGCTTCCCATCTACACTTTTCAATAAAGCATCCACATACACTGTCCTGGG
AATACTACAGTATGTTTCAGTGTAAAGCCCACCTTGTGATGAGATTGATTGAAAATAGGATCAGTATGGA
ATTTATGCTACAAGTTTTCAATAAACTGCTAAGTCTGGCTAGTACTGCTTCATCTCAGAAGTTCCAGTCA
CATATGTGGAGTCAGATGTTGGTTTCCACATCTGGGTTTTTGAAATCCATTTCAAATGTCTCTGGCAAAG
ATATTCAGCCGTTAATAAAGCAGTGGGTAGATCAGAGTGGAGTGGTAAAATTTTATGGAAGTTTTGCATT
TAATAGAAAACGAAATGTCTTGGAACTGGAAATAAAACAGGACTATACATCTCCTGGAACTCAGAAATAC
GTGGGACCACTTAAAGTGACAGTGCAGGAGTTAGATGGATCCTTCAATCATACACTGCAAATTGAAGAAA
ACAGCCTTAAACATGATATACCCTGCCATTCCAAAAGTAGAAGGAATAAAAAGAAAAAAATCCCACTGAT
GAATGGAGAAGAAGTTGATATGGATCTTTCTGCAATGGATGCTGATTCCCCTTTGCTGTGGATAAGGATA
GACCCAGATATGTCAGTATTGAGGAAGGTAGAATTTGAGCAAGCTGATTTTATGTGGCAGTATCAGCTCC
GCTATGAGAGAGATGTTGTTGCACAGCAGGAATCCATTTTGGCTTTGGAAAAATTCCCTACTCCAGCATC
TCGGCTTGCACTCACTGATATATTAGAACAAGAGCAGTGTTTCTACAGAGTAAGAATGTCAGCTTGCTTC
TGTCTTGCAAAGATTGCAAATTCAATGGTGAGCACATGGACAGGACCACCAGCCATGAAGTCACTCTTCA
CTAGGATGTTTTGTTGTAAAAGTTGTCCAAACATTGTGAAAACAAACAACTTTATGAGCTTTCAAAGCTA
TTTTCTACAGAAGACTATGCCAGTTGCAATGGCTTTATTAAGAGATGTTCATAATCTTTGTCCTAAAGAA
GTCTTAACATTTATTTTAGACTTAATCAAGTACAATGACAACAGGAAAAATAAGTTTTCAGATAACTATT
ATCGTGCAGAAATGATTGATGCCCTGGCCAACTCTGTTACACCTGCAGTCAGTGTGAATAATGAAGTTAG
AACTTTGGATAACTTAAATCCTGATGTGCGACTCATTCTTGAAGAAATCACCAGATTTTTGAATATGGAA
AAACTTCTTCCGAGTTACAGGCATACCATCACTGTCAGTTGTTTGAGAGCCATACGGGTACTTCAGAAGA
ACGGACATGTGCCAAGTGATCCAGCTCTTTTTAAATCTTATGCTGAATATGGCCACTTTGTGGACATTAG
GATAGCAGCTTTGGAAGCAGTTGTTGATTATACTAAAGTGGACAGAAGTTATGAAGAACTGCAATGGCTA
CTTAATATGATTCAGAATGACCCTGTACCCTATGTAAGGCATAAGATTCTCAACATGTTGACTAAGAACC
CACCATTTACTAAGAACATGGAGTCTCCCTTATGCAATGAAGCCCTGGTAGATCAACTTTGGAAACTTAT
GAATTCTGGTACTTCACATGACTGGAGGTTACGGTGTGGTGCTGTGGACTTGTACTTCACACTTTTTGGC
CTCAGTAGACCTTCCTGTTTACCCTTGCCAGAGCTTGGGTTGGTTCTTAATCTAAAGGAGAAAAAAGCTG
TCTTGAATCCTACCATAATTCCAGAGTCAGTAGCAGGCAACCAAGAAGCTGCAAATAATCCAAGCAGTCA
CCCACAGCTAGTTGGATTTCAGAACCCTTTTTCCAGTTCTCAAGATGAGGAGGAGATTGATATGGATACT
GTTCATGATAGCCAGGCCTTCATTTCCCATCATTTAAACATGCTTGAAAGGCCGTCAACTCCAGGGCTCT
CGAAATATCGGCCAGCTAGCTCCCGATCTGCTTTAATACCCCAGCACTCAGCAGGCTGTGACAGCACACC
CACCACAAAACCCCAGTGGAGTTTGGAACTTGCACGGAAGGGAACAGGTAAAGAACAAGCACCTTTGGAG
ATGAGTATGCATCCAGCGGCAAGCGCTCCACTCTCAGTCTTTACTAAGGAATCTACAGCCTCCAAACACA
GTGACCACCATCACCACCATCACCATGAGCACAAGAAAAAGAAGAAGAAGCATAAACATAAGCACAAACA
CAAGCATAAGCATGACAGTAAAGAAAAGGACAAGGAGCCTTTCACTTTCTCCAGCCCTGCCAGTGGCAGG
TCTATTCGTTCTCCTTCCCTTTCAGACTGA

Translation (1199 aa):
MPLTGVEPARMNRKKGDKGFESPRPYKLTHQVVCINNINFQRKSVVGFVELTIFPTVANLNRIKLNSKQC
RIYRVRINDLEAAFIYNDPTLEVCHSESKQRNLNYFSNAYAAAVSAVDPDAGNGELCIKVPSELWKHVDE
LKVLKIHINFSLDQPKGGLHFVVPSVEGSMAERGAHVFSCGYQNSTRFWFPCVDSYSELCTWKLEFTVDA
AMVAVSNGDLVETVYTHDMRKKTFHYMLTIPTAASNISLAIGPFEILVDPYMHEVTHFCLPQLLPLLKHT
TSYLHEVFEFYEEILTCRYPYSCFKTVFIDEAYVEVAAYASMSIFSTNLLHSAMIIDETPLTRRCLAQSL
AQQFFGCFISRMSWSDEWVLKGISGYIYGLWMKKTFGVNEYRHWIKEELDKIVAYELKTGGVLLHPIFGG
GKEKDNPASHLHFSIKHPHTLSWEYYSMFQCKAHLVMRLIENRISMEFMLQVFNKLLSLASTASSQKFQS
HMWSQMLVSTSGFLKSISNVSGKDIQPLIKQWVDQSGVVKFYGSFAFNRKRNVLELEIKQDYTSPGTQKY
VGPLKVTVQELDGSFNHTLQIEENSLKHDIPCHSKSRRNKKKKIPLMNGEEVDMDLSAMDADSPLLWIRI
DPDMSVLRKVEFEQADFMWQYQLRYERDVVAQQESILALEKFPTPASRLALTDILEQEQCFYRVRMSACF
CLAKIANSMVSTWTGPPAMKSLFTRMFCCKSCPNIVKTNNFMSFQSYFLQKTMPVAMALLRDVHNLCPKE
VLTFILDLIKYNDNRKNKFSDNYYRAEMIDALANSVTPAVSVNNEVRTLDNLNPDVRLILEEITRFLNME
KLLPSYRHTITVSCLRAIRVLQKNGHVPSDPALFKSYAEYGHFVDIRIAALEAVVDYTKVDRSYEELQWL
LNMIQNDPVPYVRHKILNMLTKNPPFTKNMESPLCNEALVDQLWKLMNSGTSHDWRLRCGAVDLYFTLFG
LSRPSCLPLPELGLVLNLKEKKAVLNPTIIPESVAGNQEAANNPSSHPQLVGFQNPFSSSQDEEEIDMDT
VHDSQAFISHHLNMLERPSTPGLSKYRPASSRSALIPQHSAGCDSTPTTKPQWSLELARKGTGKEQAPLE
MSMHPAASAPLSVFTKESTASKHSDHHHHHHHEHKKKKKKHKHKHKHKHKHDSKEKDKEPFTFSSPASGR
SIRSPSLSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH