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Report for CCDS32590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32590.1 Public Homo sapiens 17 SPECC1 24 110 108 CCDS HistoryNCBI Gene:92521Re-query CCDS DB by CCDS ID:32590.1Re-query CCDS DB by GeneID:92521See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 32590.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261503.9 ENSP00000261503.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000261503.9Link to Ensembl Protein Viewer:ENSP00000261503.5Re-query CCDS DB by Nucleotide ID:ENST00000261503Re-query CCDS DB by Protein ID:ENSP00000261503
Original member Current member EBI ENST00000395527.9 ENSP00000378898.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395527.9Link to Ensembl Protein Viewer:ENSP00000378898.4Re-query CCDS DB by Nucleotide ID:ENST00000395527Re-query CCDS DB by Protein ID:ENSP00000378898
Original member Current member EBI ENST00000679058.1 ENSP00000502924.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679058.1Link to Ensembl Protein Viewer:ENSP00000502924.1Re-query CCDS DB by Nucleotide ID:ENST00000679058Re-query CCDS DB by Protein ID:ENSP00000502924
Original member Current member EBI ENST00000677914.1 ENSP00000503971.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677914.1Link to Ensembl Protein Viewer:ENSP00000503971.1Re-query CCDS DB by Nucleotide ID:ENST00000677914Re-query CCDS DB by Protein ID:ENSP00000503971
Original member Current member EBI ENST00000679255.1 ENSP00000504211.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679255.1Link to Ensembl Protein Viewer:ENSP00000504211.1Re-query CCDS DB by Nucleotide ID:ENST00000679255Re-query CCDS DB by Protein ID:ENSP00000504211
Original member Current member NCBI NM_001033553.3 NP_001028725.1 Accepted alive Link to Nucleotide Sequence:NM_001033553.3Link to Protein Sequence:NP_001028725.1Re-query CCDS DB by Nucleotide ID:NM_001033553Re-query CCDS DB by Protein ID:NP_001028725Link to BLAST:NP_001028725.1
Original member Current member NCBI NM_001243439.2 NP_001230368.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001243439.2Link to Protein Sequence:NP_001230368.1Re-query CCDS DB by Nucleotide ID:NM_001243439Re-query CCDS DB by Protein ID:NP_001230368Link to BLAST:NP_001230368.1
Original member Current member NCBI NM_001386083.2 NP_001373012.2 Accepted alive Link to Nucleotide Sequence:NM_001386083.2Link to Protein Sequence:NP_001373012.2Re-query CCDS DB by Nucleotide ID:NM_001386083Re-query CCDS DB by Protein ID:NP_001373012Link to BLAST:NP_001373012.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028725.1 1068 Q5M775-1 1068 100% 0 0
NP_001230368.1 1068 Q5M775-1 1068 100% 0 0
NP_001373012.2 1068 Q5M775-1 1068 100% 0 0

Chromosomal Locations for CCDS 32590.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 20096652 20096798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20110427 20110562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20204333 20205912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20227413 20227620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20231758 20231831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20232200 20232405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20245926 20246071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20247219 20247319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20253505 20253586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20257451 20257607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20260192 20260294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20296961 20297077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20306023 20306082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20313976 20314065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3207 nt):
ATGCGGAGTGCAGCCAAGCCCTGGAACCCAGCCATCAGAGCAGGGGGCCACGGCCCAGACCGGGTGCGGC
CTCTGCCTGCAGCCTCTTCCGGCATGAAGAGTTCTAAGTCTTCAACTTCCTTGGCTTTTGAGTCCCGACT
CAGCAGGCTCAAGAGGGCCAGCAGTGAGGACACGCTCAACAAGCCAGGAAGTACCGCTGCATCGGGGGTG
GTTCGCCTGAAGAAGACCGCCACTGCCGGAGCCATCTCGGAGCTCACGGAGAGCCGCCTGAGGAGCGGCA
CAGGGGCCTTTACAACAACTAAACGGACAGGCATTCCAGCCCCACGGGAATTTTCAGTAACTGTCTCAAG
AGAGAGGTCTGTGCCACGTGGTCCCTCCAACCCCAGGAAATCAGTGTCCAGTCCAACTTCTTCCAACACT
CCCACTCCTACGAAACACCTGAGGACCCCTTCCACAAAGCCCAAGCAAGAGAATGAAGGTGGAGAAAAGG
CTGCGCTTGAGTCCCAAGTTCGGGAACTTTTGGCAGAAGCCAAAGCAAAAGATAGTGAAATTAACAGGCT
TCGAAGTGAACTAAAGAAATACAAAGAGAAAAGGACTCTGAACGCTGAGGGGACTGATGCTTTGGGCCCA
AATGTCGATGGAACATCAGTCTCCCCAGGTGACACGGAACCTATGATAAGAGCTCTTGAGGAGAAGAACA
AGAACTTTCAGAAAGAGCTTTCCGATCTAGAGGAAGAAAACCGGGTCCTGAAGGAGAAACTGATCTATCT
TGAGCACTCCCCAAATTCAGAAGGGGCAGCAAGTCACACTGGCGACAGCAGCTGCCCAACATCCATAACT
CAAGAGTCAAGCTTCGGAAGCCCAACTGGAAATCAGATGTCCAGTGACATTGATGAGTATAAAAAAAACA
TACATGGAAATGCATTACGGACATCAGGCTCCTCAAGTAGCGATGTTACCAAAGCTTCTTTGTCGCCAGA
TGCTTCCGACTTTGAGCACATTACAGCAGAGACACCCTCAAGGCCCCTGTCCTCCACCAGTAACCCCTTT
AAGAGTTCAAAGTGTTCTACTGCTGGGAGTTCCCCAAACAGCGTAAGTGAATTGTCCCTGGCTTCCCTCA
CAGAGAAGATACAAAAGATGGAAGAAAACCACCATAGCACTGCAGAAGAACTACAGGCTACTCTACAAGA
ATTATCAGACCAGCAACAAATGGTACAGGAATTGACAGCTGAAAATGAGAAGCTGGTGGATGAAAAGACG
ATTTTAGAGACATCCTTTCATCAGCATCGAGAGAGGGCAGAGCAGCTAAGTCAAGAAAATGAGAAGCTGA
TGAATCTTTTACAAGAGCGAGTAAAGAATGAAGAGCCCACCACTCAGGAAGGAAAAATTATTGAACTGGA
GCAGAAGTGCACAGGTATTCTTGAACAGGGCCGCTTTGAAAGAGAGAAGCTACTCAACATTCAGCAGCAG
TTGACCTGTAGCTTGCGGAAGGTTGAGGAAGAAAACCAAGGAGCTTTAGAAATGATTAAACGTCTGAAGG
AAGAAAATGAAAAACTGAATGAGTTTCTAGAACTGGAACGGCATAATAATAACATGATGGCCAAAACTTT
GGAAGAGTGTAGAGTTACCTTGGAAGGGCTAAAAATGGAGAATGGATCTTTGAAGTCTCATTTGCAGGGT
GAGAAGCAGAAAGCCACAGAGGCCAGTGCTGTGGAGCAGACGGCAGAGAGCTGCGAAGTTCAAGAAATGT
TGAAAGTAGCCCGAGCAGAGAAAGATCTACTGGAACTGTCTTGCAATGAGCTCAGACAAGAATTACTAAA
GGCAAACGGTGAAATTAAACATGTTTCCAGTCTGCTGGCCAAGGTGGAAAAGGATTATTCATACCTGAAG
GAGATATGTGATCACCAAGCCGAACAGCTGAGCAGAACCAGCCTAAAGCTGCAAGAAAAAGCATCAGAGA
GTGATGCAGAGATCAAAGACATGAAAGAAACCATATTTGAATTGGAAGATCAGGTGGAACAGCACCGGGC
TGTCAAGTTACACAATAATCAACTCATCAGTGAGCTAGAAAGTAGTGTGATCAAGCTGGAGGAACAGAAG
TCAGACCTGGAGAGGCAGCTGAAGACTCTGACCAAGCAGATGAAGGAGGAGACCGAGGAATGGAGGCGGT
TCCAGGCGGATCTGCAGACCGCAGTGGTGGTGGCCAATGACATCAAGTGTGAGGCCCAGCAGGAGCTGCG
CACCGTGAAGAGGAAACTGCTGGAGGAGGAGGAGAAGAATGCCCGGTTGCAGAAGGAGCTGGGGGATGTG
CAGGGCCACGGCAGGGTGGTCACCAGCAGAGCCGCCCCTCCACCTGTGGATGAAGAGCCAGAGTCCTCTG
AGGTCGATGCTGCTGGTCGGTGGCCTGGTGTCTGTGTTAGCAGAACATCTCCAACACCCCCAGAGTCGGC
AACCACCGTTAAGTCACTTATCAAGTCATTTGACTTGGGACGCCCAGGTGGAGCTGGACAGAATATTTCT
GTCCATAAGACCCCCAGAAGTCCCCTAAGTGGGATACCAGTGAGGACTGCTCCAGCAGCTGCTGTCTCTC
CAATGCAGAGGCATTCGACTTACAGCAGTGTGCGGCCAGCCAGCAGAGGGGTGACTCAACGCTTGGACCT
TCCTGACCTTCCCCTCTCAGATATTCTAAAGGGAAGGACTGAGACCCTGAAGCCAGACCCCCACCTCCGC
AAGAGTCCCTCACTAGAGTCACTGAGCAGACCCCCGTCTCTGGGCTTTGGGGACACAAGACTGCTGAGTG
CTTCCACCCGGGCATGGAAACCACAAAGCAAACTCAGTGTGGAAAGAAAAGACCCTCTGGCAGCCTTGGC
CCGGGAATACGGTGGTTCCAAGCGCAATGCTCTACTGAAATGGTGCCAGAAGAAGACACAAGGTTATGCG
AACATTGACATCACCAATTTCAGCAGCAGCTGGAGCGATGGCCTGGCCTTCTGTGCTCTGCTCCACACCT
ACCTGCCTGCCCACATCCCCTACCAGGAGCTGAATAGTCAGGAGAAAAAGAGGAATCTCTTGTTGGCATT
TGAAGCGGCTGAAAGTGTAGGCATCAAACCCAGCCTGGAACTCAGCGAGATGCTGTACACAGACCGGCCC
GACTGGCAGAGTGTGATGCAGTACGTGGCCCAAATCTACAAGTACTTTGAGACGTAA

Translation (1068 aa):
MRSAAKPWNPAIRAGGHGPDRVRPLPAASSGMKSSKSSTSLAFESRLSRLKRASSEDTLNKPGSTAASGV
VRLKKTATAGAISELTESRLRSGTGAFTTTKRTGIPAPREFSVTVSRERSVPRGPSNPRKSVSSPTSSNT
PTPTKHLRTPSTKPKQENEGGEKAALESQVRELLAEAKAKDSEINRLRSELKKYKEKRTLNAEGTDALGP
NVDGTSVSPGDTEPMIRALEEKNKNFQKELSDLEEENRVLKEKLIYLEHSPNSEGAASHTGDSSCPTSIT
QESSFGSPTGNQMSSDIDEYKKNIHGNALRTSGSSSSDVTKASLSPDASDFEHITAETPSRPLSSTSNPF
KSSKCSTAGSSPNSVSELSLASLTEKIQKMEENHHSTAEELQATLQELSDQQQMVQELTAENEKLVDEKT
ILETSFHQHRERAEQLSQENEKLMNLLQERVKNEEPTTQEGKIIELEQKCTGILEQGRFEREKLLNIQQQ
LTCSLRKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLEGLKMENGSLKSHLQG
EKQKATEASAVEQTAESCEVQEMLKVARAEKDLLELSCNELRQELLKANGEIKHVSSLLAKVEKDYSYLK
EICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQVEQHRAVKLHNNQLISELESSVIKLEEQK
SDLERQLKTLTKQMKEETEEWRRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNARLQKELGDV
QGHGRVVTSRAAPPPVDEEPESSEVDAAGRWPGVCVSRTSPTPPESATTVKSLIKSFDLGRPGGAGQNIS
VHKTPRSPLSGIPVRTAPAAAVSPMQRHSTYSSVRPASRGVTQRLDLPDLPLSDILKGRTETLKPDPHLR
KSPSLESLSRPPSLGFGDTRLLSASTRAWKPQSKLSVERKDPLAALAREYGGSKRNALLKWCQKKTQGYA
NIDITNFSSSWSDGLAFCALLHTYLPAHIPYQELNSQEKKRNLLLAFEAAESVGIKPSLELSEMLYTDRP
DWQSVMQYVAQIYKYFET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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