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Report for CCDS3077.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3077.1 Public Homo sapiens 3 UBA5 24 110 108 CCDS HistoryNCBI Gene:79876Re-query CCDS DB by CCDS ID:3077.1Re-query CCDS DB by GeneID:79876See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3077.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264991.8 ENSP00000264991.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000264991.8Link to Ensembl Protein Viewer:ENSP00000264991.4Re-query CCDS DB by Nucleotide ID:ENST00000264991Re-query CCDS DB by Protein ID:ENSP00000264991
Original member Current member EBI ENST00000494238.6 ENSP00000418807.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000494238.6Link to Ensembl Protein Viewer:ENSP00000418807.2Re-query CCDS DB by Nucleotide ID:ENST00000494238Re-query CCDS DB by Protein ID:ENSP00000418807
Original member Current member NCBI NM_001320210.2 NP_001307139.1 Accepted alive Link to Nucleotide Sequence:NM_001320210.2Link to Protein Sequence:NP_001307139.1Re-query CCDS DB by Nucleotide ID:NM_001320210Re-query CCDS DB by Protein ID:NP_001307139Link to BLAST:NP_001307139.1
Original member Current member NCBI NM_198329.4 NP_938143.1 Accepted alive Link to Nucleotide Sequence:NM_198329.4Link to Protein Sequence:NP_938143.1Re-query CCDS DB by Nucleotide ID:NM_198329Re-query CCDS DB by Protein ID:NP_938143Link to BLAST:NP_938143.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307139.1 348 Q9GZZ9-2 348 100% 0 0
NP_938143.1 348 Q9GZZ9-2 348 100% 0 0

Chromosomal Locations for CCDS 3077.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 132665830 132665868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132665984 132666073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132668818 132668927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132670198 132670284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132670965 132671049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132671777 132671881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132672050 132672177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132675248 132675383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132675605 132675680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132675817 132675923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132676443 132676526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGGCATTGAAACGAATGGGAATTGTAAGCGACTATGAGAAAATCCGTACCTTTGCCGTAGCAATAGTAG
GTGTTGGTGGAGTAGGTAGTGTGACTGCTGAAATGCTGACAAGATGTGGCATTGGTAAGTTGCTACTCTT
TGATTATGACAAGGTGGAACTAGCCAATATGAATAGACTTTTCTTCCAACCTCATCAAGCAGGATTAAGT
AAAGTTCAAGCAGCAGAACATACTCTGAGGAACATTAATCCTGATGTTCTTTTTGAAGTACACAACTATA
ATATAACCACAGTGGAAAACTTTCAACATTTCATGGATAGAATAAGTAATGGTGGGTTAGAAGAAGGAAA
ACCTGTTGATCTAGTTCTTAGCTGTGTGGACAATTTTGAAGCTCGAATGACAATAAATACAGCTTGTAAT
GAACTTGGACAAACATGGATGGAATCTGGGGTCAGTGAAAATGCAGTTTCAGGGCATATACAGCTTATAA
TTCCTGGAGAATCTGCTTGTTTTGCGTGTGCTCCACCACTTGTAGTTGCTGCAAATATTGATGAAAAGAC
TCTGAAACGAGAAGGTGTTTGTGCAGCCAGTCTTCCTACCACTATGGGTGTGGTTGCTGGGATCTTAGTA
CAAAACGTGTTAAAGTTTCTGTTAAATTTTGGTACTGTTAGTTTTTACCTTGGATACAATGCAATGCAGG
ATTTTTTTCCTACTATGTCCATGAAGCCAAATCCTCAGTGTGATGACAGAAATTGCAGGAAGCAGCAGGA
GGAATATAAGAAAAAGGTAGCAGCACTGCCTAAACAAGAGGTTATACAAGAAGAGGAAGAGATAATCCAT
GAAGATAATGAATGGGGTATTGAGCTGGTATCTGAGGTTTCAGAAGAGGAACTGAAAAATTTTTCAGGTC
CAGTTCCAGACTTACCTGAAGGAATTACAGTGGCATACACAATTCCAAAAAAGCAAGAAGATTCTGTCAC
TGAGTTAACAGTGGAAGATTCTGGTGAAAGCTTGGAAGACCTCATGGCCAAAATGAAGAATATGTAG

Translation (348 aa):
MALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLS
KVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACN
ELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVAANIDEKTLKREGVCAASLPTTMGVVAGILV
QNVLKFLLNFGTVSFYLGYNAMQDFFPTMSMKPNPQCDDRNCRKQQEEYKKKVAALPKQEVIQEEEEIIH
EDNEWGIELVSEVSEEELKNFSGPVPDLPEGITVAYTIPKKQEDSVTELTVEDSGESLEDLMAKMKNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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