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Report for CCDS260.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
260.1 Public Homo sapiens 1 RSRP1 24 110 108 CCDS HistoryNCBI Gene:57035Re-query CCDS DB by CCDS ID:260.1Re-query CCDS DB by GeneID:57035See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 260.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000243189.12 ENSP00000243189.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000243189.12Link to Ensembl Protein Viewer:ENSP00000243189.7Re-query CCDS DB by Nucleotide ID:ENST00000243189Re-query CCDS DB by Protein ID:ENSP00000243189
Original member Current member NCBI NM_001321772.2 NP_001308701.1 Accepted alive Link to Nucleotide Sequence:NM_001321772.2Link to Protein Sequence:NP_001308701.1Re-query CCDS DB by Nucleotide ID:NM_001321772Re-query CCDS DB by Protein ID:NP_001308701Link to BLAST:NP_001308701.1
Original member Current member NCBI NM_020317.5 NP_064713.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020317.5Link to Protein Sequence:NP_064713.3Re-query CCDS DB by Nucleotide ID:NM_020317Re-query CCDS DB by Protein ID:NP_064713Link to BLAST:NP_064713.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308701.1 290 Q9BUV0-1 290 100% 0 0
NP_064713.3 290 Q9BUV0-1 290 100% 0 0

Chromosomal Locations for CCDS 260.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 25242589 25242705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25243550 25243633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25245150 25245301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25246444 25246963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGTCCAACTACGTGAACGACATGTGGCCGGGCTCGCCGCAGGAGAAGGATTCGCCCTCGACCTCGCGGT
CGGGCGGGTCCAGCCGGCTGTCGTCGCGGTCTAGGAGCCGCTCTTTTTCCAGAAGCTCTCGGTCCCATTC
CCGCGTCTCGAGCCGGTTTTCGTCCAGGAGTCGGAGGAGCAAGTCCAGGTCCCGTTCCCGAAGGCGCCAC
CAGCGGAAGTACAGGCGCTACTCGCGGTCATACTCGCGGAGCCGGTCGCGATCCCGCAGCCGCCGTTACC
GAGAGAGGCGCTACGGGTTCACCAGGAGATACTACCGGTCTCCTTCGCGGTACCGGTCCCGGTCCCGTAG
CAGGTCGCGCTCTCGGGGAAGGTCGTACTGCGGAAGGGCGTACGCGATCGCGCGGGGACAGCGCTACTAC
GGCTTTGGTCGCACAGTGTACCCGGAGGAGCACAGCAGATGGAGGGACAGATCCAGGACGAGGTCGCGGA
GCAGAACCCCCTTTCGCTTAAGTGAAAAAGATCGAATGGAGCTGTTAGAAATAGCAAAAACCAATGCAGC
GAAAGCTCTAGGAACAACCAACATTGACTTGCCAGCTAGTCTCAGAACTGTTCCTTCAGCCAAAGAAACA
AGCCGTGGAATAGGTGTATCAAGTAATGGTGCAAAGCCTGAACTGTCGGAAAAGGTAACAGAAGATGGAA
CTCGAAATCCCAATGAAAAACCTACCCAGCAAAGAAGCATAGCTTTTAGCTCTAATAATTCTGTAGCAAA
GCCAATACAAAAATCAGCTAAAGCTGCCACAGAAGAGGCATCTTCAAGATCACCAAAAATAGATCAGAAA
AAAAGTCCATATGGACTGTGGATACCTATCTAA

Translation (290 aa):
MSNYVNDMWPGSPQEKDSPSTSRSGGSSRLSSRSRSRSFSRSSRSHSRVSSRFSSRSRRSKSRSRSRRRH
QRKYRRYSRSYSRSRSRSRSRRYRERRYGFTRRYYRSPSRYRSRSRSRSRSRGRSYCGRAYAIARGQRYY
GFGRTVYPEEHSRWRDRSRTRSRSRTPFRLSEKDRMELLEIAKTNAAKALGTTNIDLPASLRTVPSAKET
SRGIGVSSNGAKPELSEKVTEDGTRNPNEKPTQQRSIAFSSNNSVAKPIQKSAKAATEEASSRSPKIDQK
KSPYGLWIPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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