NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2420.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2420.1 Public Homo sapiens 2 RNF25 24 110 108 CCDS HistoryNCBI Gene:64320Re-query CCDS DB by CCDS ID:2420.1Re-query CCDS DB by GeneID:64320See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2420.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295704.7 ENSP00000295704.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295704.7Link to Ensembl Protein Viewer:ENSP00000295704.2Re-query CCDS DB by Nucleotide ID:ENST00000295704Re-query CCDS DB by Protein ID:ENSP00000295704
Original member Current member NCBI NM_022453.3 NP_071898.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022453.3Link to Protein Sequence:NP_071898.2Re-query CCDS DB by Nucleotide ID:NM_022453Re-query CCDS DB by Protein ID:NP_071898Link to BLAST:NP_071898.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071898.2 459 Q96BH1 459 100% 0 0

Chromosomal Locations for CCDS 2420.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 218663957 218664535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218664739 218664873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218665155 218665247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218665916 218666059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218666159 218666230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218667912 218667981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218668079 218668146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218668239 218668341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218668605 218668679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218671930 218671970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGGCGGCGTCTGCGTCTGCAGCTGCAGGGGAGGAGGACTGGGTCCTTCCCTCTGAAGTTGAAGTATTGG
AG
TCCATCTATCTAGATGAACTACAGGTGATTAAAGGAAATGGCAGAACTTCACCATGGGAGATCTACAT
C
ACTTTGCATCCTGCCACTGCAGAGGACCAGGATTCACAGTATGTCTGCTTCACTCTGGTGCTTCAGGTC
CCA
GCAGAGTATCCCCATGAGGTGCCACAGATCTCTATCCGAAATCCCCGAGGACTTTCAGATGAACAGA
TC
CACACGATCTTACAGGTGCTGGGCCACGTGGCCAAGGCTGGGCTGGGCACTGCCATGCTGTATGAACT
C
ATTGAGAAAGGGAAGGAAATTCTCACAGATAACAACATCCCTCATGGCCAGTGTGTCATCTGCCTCTAT
GGT
TTCCAGGAGAAGGAGGCCTTTACCAAAACACCCTGTTACCACTACTTCCACTGCCACTGCCTTGCTC
GG
TACATCCAGCACATGGAGCAAGAGCTGAAGGCACAAGGACAGGAGCAGGAACAGGAACGGCAGCATGC
T
ACAACCAAACAGAAGGCAGTCGGTGTGCAGTGTCCAGTGTGCAGAGAGCCCCTCGTGTATGATCTTGCC
TCA
CTGAAAGCAGCCCCTGAACCCCAACAGCCCATGGAGCTGTACCAGCCCAGTGCAGAGAGCTTGCGCC
AG
CAAGAAGAACGCAAGCGGCTCTACCAGAGGCAGCAGGAGCGGGGGGGAATCATTGACCTTGAGGCTGA
G
CGAAACCGATACTTCATCAGCCTTCAGCAGCCTCCTGCCCCTGCGGAACCTGAGTCAGCTGTAGATGTC
TCC
AAAGGATCCCAACCACCCAGCACCCTTGCAGCAGAACTATCCACCTCACCAGCCGTCCAATCCACTT
TG
CCACCTCCTCTGCCTGTGGCGACCCAGCACATATGTGAGAAGATTCCAGGGACCAGGTCAAATCAGCA
A
AGGTTGGGCGAAACCCAGAAAGCTATGCTAGATCCCCCCAAGCCCAGTCGAGGTCCCTGGCGACAGCCC
GAA
CGGAGGCACCCAAAGGGAGGGGAGTGCCACGCCCCTAAAGGTACCCGTGACACCCAGGAACTGCCAC
CT
CCTGAGGGGCCCCTCAAGGAGCCCATGGACCTAAAGCCAGAACCCCATAGCCAAGGAGTTGAAGGTCC
T
CCACAAGAGAAGGGGCCTGGCAGCTGGCAGGGGCCCCCACCCCGCAGGACTCGGGACTGTGTTCGCTGG
GAG
CGCTCTAAAGGCCGGACACCCGGTTCTTCCTACCCTCGCCTGCCTCGGGGCCAGGGAGCATACCGGC
CT
GGTACTCGGAGGGAGTCCCTGGGCCTGGAATCTAAGGATGGTTCCTAG


Translation (459 aa):
MAASASAAAGEEDWVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQV
P
AE
YPHEVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEILTDNNIPHGQCVICLY
G
FQ
EKEAFTKTPCYHYFHCHCLARYIQHMEQELKAQGQEQEQERQHATTKQKAVGVQCPVCREPLVYDLA
S
LKAAPEPQQPM
ELYQPSAESLRQQEERKRLYQRQQERGGIIDLEAERNRYFISLQQPPAPAEPESAVDV
S
KGSQPPSTLAAELSTSPAVQSTLPPPLPVATQHICEKIPGTRSNQQRLGETQKAMLDPPKPSRGPWRQP
E
RRHPKGGECHAPKGTRDTQELPPPEGPLKEPMDLKPEPHSQGVEGPPQEKGPGSWQGPPPRRTRDCVRW
E
RSKGRTPGSSYPRLPRGQGAYRPGTRRESLGLESKDGS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser