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Report for CCDS1941.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1941.1 Public Homo sapiens 2 RTKN 24 110 108 CCDS HistoryNCBI Gene:6242Re-query CCDS DB by CCDS ID:1941.1Re-query CCDS DB by GeneID:6242See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1941.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305557.9 ENSP00000305298.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000305557.9Link to Ensembl Protein Viewer:ENSP00000305298.5Re-query CCDS DB by Nucleotide ID:ENST00000305557Re-query CCDS DB by Protein ID:ENSP00000305298
Original member Current member NCBI NM_033046.2 NP_149035.1 Accepted alive Link to Nucleotide Sequence:NM_033046.2Link to Protein Sequence:NP_149035.1Re-query CCDS DB by Nucleotide ID:NM_033046Re-query CCDS DB by Protein ID:NP_149035Link to BLAST:NP_149035.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149035.1 550 Q9BST9-2 550 100% 0 0

Chromosomal Locations for CCDS 1941.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 74426243 74426574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74427169 74427273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74427424 74427592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74428268 74428396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74428631 74428737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74428848 74428942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74429828 74430037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74430252 74430369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74430465 74430518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74430616 74430677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74432467 74432666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74439551 74439622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1653 nt):
ATGCAGGACAGATTGCACATCCTGGAGGACCTGAATATGCTCTACATTCGGCAGATGGCACTCAGCCTGG
AGGACACGGAGTTGCAGAGGAAGCTAGACCATGAGATCCGGATGAGGGAAGGGGCCTGTAAGCTGCTGGC
AGCCTGCTCCCAGCGAGAGCAGGCTCTGGAGGCCACCAAGAGCCTGCTAGTGTGCAACAGCCGCATCCTC
AGCTACATGGGCGAGCTGCAGCGGCGCAAGGAGGCGCAGGTGCTGGGGAAGACAAGCCGGCGGCCTTCTG
ACAGTGGCCCGCCCGCTGAGCGCTCCCCCTGCCGCGGCCGGGTCTGCATCTCTGACCTCCGGATTCCACT
CATGTGGAAGGACACAGAATATTTCAAGAACAAAGGTGACTTGCACCGCTGGGCTGTGTTCCTGCTGCTG
CAGCTGGGGGAACACATCCAGGACACAGAGATGATCCTAGTGGACAGGACCCTCACAGACATCTCCTTTC
AGAGCAATGTGCTCTTCGCTGAGGCGGGGCCAGACTTTGAACTGCGGTTAGAGCTGTATGGGGCCTGTGT
GGAAGAAGAGGGGGCCCTGACTGGCGGCCCCAAGAGGCTTGCCACCAAACTCAGCAGCTCCCTGGGCCGC
TCCTCAGGGAGGCGTGTCCGGGCATCGCTGGACAGTGCTGGGGGTTCAGGGAGCAGTCCCATCTTGCTCC
CCACCCCAGTTGTTGGTGGTCCTCGTTACCACCTCTTGGCTCACACCACACTCACCCTGGCAGCAGTGCA
AGATGGATTCCGCACACATGACCTCACCCTTGCCAGTCATGAGGAGAACCCTGCCTGGCTGCCCCTTTAT
GGTAGCGTGTGTTGCCGTCTGGCAGCTCAGCCTCTCTGCATGACTCAGCCCACTGCAAGTGGTACCCTCA
GGGTGCAGCAAGCTGGGGAGATGCAGAACTGGGCACAAGTGCATGGAGTTCTGAAAGGCACAAACCTCTT
CTGTTACCGGCAACCTGAGGATGCAGACACTGGGGAAGAGCCGCTGCTTACTATTGCTGTCAACAAGGAG
ACTCGAGTCCGGGCAGGGGAGCTGGACCAGGCTCTAGGACGGCCCTTCACCCTAAGCATCAGTAACCAGT
ATGGGGATGATGAGGTGACACACACCCTTCAGACAGAAAGTCGGGAAGCACTGCAGAGCTGGATGGAGGC
TCTGTGGCAGCTTTTCTTTGACATGAGCCAATGGAAGCAGTGCTGTGATGAAATCATGAAAATTGAAACT
CCTGCTCCCCGGAAACCACCCCAAGCACTGGCAAAGCAGGGGTCCTTGTACCATGAGATGGCTATTGAGC
CGCTGGATGACATCGCAGCGGTGACAGACATCCTGACCCAGCGGGAGGGCGCAAGGCTGGAGACACCCCC
ACCCTGGCTGGCAATGTTTACAGACCAGCCTGCCCTGCCTAACCCCTGCTCGCCTGCCTCAGTGGCCCCA
GCCCCAGACTGGACCCACCCCCTGCCCTGGGGGAGACCCCGAACCTTTTCCCTGGATGCTGTCCCCCCAG
ACCACTCCCCTAGGGCTCGCTCGGTTGCCCCCCTCCCACCTCAGCGATCCCCACGGACCAGAGGCCTCTG
CAGCAAAGGCCAACCTCGCACTTGGCTCCAGTCACCAGTGTGA

Translation (550 aa):
MQDRLHILEDLNMLYIRQMALSLEDTELQRKLDHEIRMREGACKLLAACSQREQALEATKSLLVCNSRIL
SYMGELQRRKEAQVLGKTSRRPSDSGPPAERSPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLL
QLGEHIQDTEMILVDRTLTDISFQSNVLFAEAGPDFELRLELYGACVEEEGALTGGPKRLATKLSSSLGR
SSGRRVRASLDSAGGSGSSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTHDLTLASHEENPAWLPLY
GSVCCRLAAQPLCMTQPTASGTLRVQQAGEMQNWAQVHGVLKGTNLFCYRQPEDADTGEEPLLTIAVNKE
TRVRAGELDQALGRPFTLSISNQYGDDEVTHTLQTESREALQSWMEALWQLFFDMSQWKQCCDEIMKIET
PAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQREGARLETPPPWLAMFTDQPALPNPCSPASVAP
APDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPPQRSPRTRGLCSKGQPRTWLQSPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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