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Report for CCDS14575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14575.1 Public Homo sapiens X LONRF3 24 110 108 CCDS HistoryNCBI Gene:79836Re-query CCDS DB by CCDS ID:14575.1Re-query CCDS DB by GeneID:79836See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 14575.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304778.11 ENSP00000307732.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000304778.11Link to Ensembl Protein Viewer:ENSP00000307732.7Re-query CCDS DB by Nucleotide ID:ENST00000304778Re-query CCDS DB by Protein ID:ENSP00000307732
Original member Current member NCBI NM_024778.5 NP_079054.3 Accepted alive Link to Nucleotide Sequence:NM_024778.5Link to Protein Sequence:NP_079054.3Re-query CCDS DB by Nucleotide ID:NM_024778Re-query CCDS DB by Protein ID:NP_079054Link to BLAST:NP_079054.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079054.3 718 Q496Y0-2 718 100% 0 0

Chromosomal Locations for CCDS 14575.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 118974781 118975597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118978345 118978463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118989408 118989672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118990470 118990560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 119006121 119006235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 119009126 119009247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 119011815 119011973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 119013039 119013201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 119014207 119014356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 119017535 119017690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2157 nt):
ATGGAGTCAGTACGGATCGAACAGATGCTGAGCTTGCCCGCTGAGGTCAGCAGCGACAACTTGGAGTCGG
CGGAGCGAGGGGCATCAGCGGCCCAAGTAGACATGGGCCCCCACCCAAAGGTGGCTGCAGAGGGCCCCGC
ACCTCTACCGACGCGGGAGCCAGAGCAAGAGCAGTCTCCGGGGACCTCAACGCCGGAGAGCAAAGTCCTG
CTCACGCAGGCAGACGCCTTGGCGTCCCGGGGGCGAATCCGTGAAGCCCTCGAGGTGTATAGACAGCTCT
CCGAGCGGCAGCAGCTGGTGGCTGAGCAGCTGGAGCAGCTGGTGCGCTGCCTGGCGGAGAAAGTCCCGCA
AGGCGAGGCGCTGGCGCCGGCGCCCCCGGACGAGGGTAGCACTGCAAGCGGCACCGTGGCGGCGGAAGAG
ACGGGGGCCGCCGCGGCTGCGGCGGCCACCGAGGTGTGGGACGGCTTTAAGTGCCGGAAATGTCATGGGT
TTCTATCAGACCCCGTGTCCTTGTCGTGTGGCCACACCTTTTGTAAACTGTGCCTGGAACGTGGGCGGGC
CGCCGACCGGCGCTGTGCGCTGTGCGGGGTCAAGCTCTCCGCCTTGATGGTGGCCACTGGGCGGGCGCGT
GGAGCCCGGCGGGCTGGGCAGCAGCCGCCGCCGCCGCTGCGAGTCAACGTGGTGCTCAGCGGCCTCCTCG
GCAAGTTGTTTCCAGGCCCAGCGCGAGCGTCGCAACTCCGGCACGAGGGCAACCGACTGTACCGCGAGCG
CCAGGTGGAGGCGGCACTGCTCAAGTACAACGAGGCAGTTAAGTTGGCTCCAAATGACCACTTGCTTTAT
AGCAATCGGTCTCAGATTTATTTCACCTTGGAGTCTCATGAGAATGCACTGCATGATGCAGAAATAGCAT
GTAAGCTCCGCCCGATGGGTTTTAAGGACAATCTGGAGCTCCCACATTGTTCTAGTCAGGAGGAAGCAGC
AGCCAGGGGAGATGGCAGCAGTCTGATGGACCCAGCTAAAGTGAAGGGGGATGGTCAGCAGCACCACATG
AAAGACCAGGAAGAAGAGGAGGAGAAGTGGGATGCTACCTCTCCAAAAGCTGCTTCCAGCAAGACTGGAA
AATGCCAGGAAAAGAAAAGGAAACATTGCCAGATTGAATCCCAAGAAGAAACGGGGATGCCTAATAAAGC
CTCCAAGCAAGATCCTCCCACTGATCAGGGGGACAAACCTGCTCTCAGTTTACCACTTGCATCTTTCGAC
GCATCTGACCTTGAATGCGCTCTATGTATGAGATTATTCTATGAGCCAGTCACAACACCTTGCGGGCATA
CTTTTTGCTTAAAATGCCTAGAAAGATGCCTAGATCACAACGCAAAGTGTCCATTGTGCAAAGACGGTCT
TTCACAGTGCTTGGCATCAAGAAAATACAGCAAAAATGTAATAATGGAGGAGCTCATAGCTAAATTCCTT
CCAGAAGAACTGAAGGAACGAAGGAAGCTTTATGAAGAGGAAATGGAAGAACTTTCTAACCTTAATAAGA
ATGTGCCTATTTTCGTGTGTACTATGGCCTATCCCACCGTTCCTTGTCCCCTGCACATCTTTGAGCCTTG
TTACCGCCTGATGATTCGTAGATGCATTGAGACAGGCACGAGACAGTTTGGCATGTGCCTTGGAGATCCT
GTCAAAGGGTTTGCAGAATATGGCTGCATCCTAGAGATCAGAAATGTTCAATTCTTTGCTGATGGCCGCT
CAGTGGTTGACAGCATAGGCAAGAGGCGCTTCAGGGTGCTCCATCAGAGCCAGCGGGATGGCTACAACAC
AGCCGACATTGAATACATTGAAGACCAAAAGGTTCAGGGAGAGGATTGTGCTGAGCTCATGGGATTACAT
AACTGTGTCTATCAGCAAGCATCATTGTGGTTTCATTCGCTCAAATTATCCCTAAAGAATCGGATACTCA
ATCACTTTGGTCCCATGCCGGAGAAAGACGCCGATCCTCAGATGAACCCGAATGGCCCAGCCTGGTGCTG
GTGGATGTTAGCAGTTCTTCCCTTGGAAAGCCGAGCTCAGCTCCCCTTCCTAGCAATGAGGTCCTTAAAG
GACAGACTGAATGGTATTCGACGAGTCCTGGCCTTCATATCCCGAAACCAAAACTAG

Translation (718 aa):
MESVRIEQMLSLPAEVSSDNLESAERGASAAQVDMGPHPKVAAEGPAPLPTREPEQEQSPGTSTPESKVL
LTQADALASRGRIREALEVYRQLSERQQLVAEQLEQLVRCLAEKVPQGEALAPAPPDEGSTASGTVAAEE
TGAAAAAAATEVWDGFKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVKLSALMVATGRAR
GARRAGQQPPPPLRVNVVLSGLLGKLFPGPARASQLRHEGNRLYRERQVEAALLKYNEAVKLAPNDHLLY
SNRSQIYFTLESHENALHDAEIACKLRPMGFKDNLELPHCSSQEEAAARGDGSSLMDPAKVKGDGQQHHM
KDQEEEEEKWDATSPKAASSKTGKCQEKKRKHCQIESQEETGMPNKASKQDPPTDQGDKPALSLPLASFD
ASDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVIMEELIAKFL
PEELKERRKLYEEEMEELSNLNKNVPIFVCTMAYPTVPCPLHIFEPCYRLMIRRCIETGTRQFGMCLGDP
VKGFAEYGCILEIRNVQFFADGRSVVDSIGKRRFRVLHQSQRDGYNTADIEYIEDQKVQGEDCAELMGLH
NCVYQQASLWFHSLKLSLKNRILNHFGPMPEKDADPQMNPNGPAWCWWMLAVLPLESRAQLPFLAMRSLK
DRLNGIRRVLAFISRNQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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