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Report for CCDS13468.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13468.1 Public Homo sapiens 20 STX16 24 110 108 CCDS HistoryNCBI Gene:8675Re-query CCDS DB by CCDS ID:13468.1Re-query CCDS DB by GeneID:8675See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13468.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371141.8 ENSP00000360183.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371141.8Link to Ensembl Protein Viewer:ENSP00000360183.4Re-query CCDS DB by Nucleotide ID:ENST00000371141Re-query CCDS DB by Protein ID:ENSP00000360183
Original member Current member NCBI NM_001001433.3 NP_001001433.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001433.3Link to Protein Sequence:NP_001001433.1Re-query CCDS DB by Nucleotide ID:NM_001001433Re-query CCDS DB by Protein ID:NP_001001433Link to BLAST:NP_001001433.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001433.1 325 O14662-1 325 100% 0 0

Chromosomal Locations for CCDS 13468.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 58652007 58652138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58659623 58659634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58667490 58667597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58667987 58668127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58669291 58669453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58670512 58670603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58671154 58671297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58673631 58673711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58676187 58676291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGGCCACCAGGCGTTTAACCGACGCTTTCTTGTTGTTGCGGAATAATTCCATCCAAAACCGGCAGCTGT
TAGCCGAGCAAGTGAGTAGTCACATCACCTCCAGCCCTCTGCATTCACGTAGCATTGCTGCGGAGCTGGA
CGAGCTTGCTGATGACCGTATGGCACTGGTGTCAGGCATCAGCTTAGATCCAGAAGCAGCGATTGGTGTG
ACAAAACGGCCACCTCCTAAGTGGGTGGATGGAGTGGATGAAATTCAGTATGATGTTGGCCGGATTAAGC
AGAAGATGAAAGAATTGGCCAGCCTTCATGACAAGCATTTAAACAGACCCACCCTGGATGACAGCAGCGA
AGAGGAACATGCCATTGAGATAACTACCCAAGAGATCACTCAGCTCTTCCACAGGTGCCAGCGTGCCGTG
CAGGCCCTGCCGAGCCGGGCCCGGGCCTGCTCCGAGCAGGAGGGGCGGCTGCTTGGGAACGTGGTGGCCT
CGCTGGCGCAGGCCCTGCAGGAACTCTCCACCAGCTTCCGGCACGCACAGTCAGGCTACCTCAAACGCAT
GAAGAATCGAGAGGAAAGATCCCAGCATTTTTTCGACACATCAGTACCACTAATGGATGATGGAGACGAT
AACACTCTTTACCATCGGGGTTTTACAGAGGACCAGTTAGTTCTGGTGGAGCAGAACACACTGATGGTGG
AAGAGCGGGAACGAGAGATTCGCCAGATTGTACAGTCCATTTCTGACCTGAATGAAATATTCAGGGACTT
AGGGGCGATGATTGTAGAACAGGGTACAGTCCTTGACAGAATTGACTATAACGTTGAACAGTCCTGTATC
AAAACTGAAGATGGTTTGAAACAGCTTCACAAGGCAGAACAGTATCAAAAGAAGAATCGGAAGATGCTTG
TGATTTTAATATTATTTGTCATCATCATTGTGCTCATTGTTGTCCTCGTTGGCGTGAAGTCTCGATAA

Translation (325 aa):
MATRRLTDAFLLLRNNSIQNRQLLAEQVSSHITSSPLHSRSIAAELDELADDRMALVSGISLDPEAAIGV
TKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEITQLFHRCQRAV
QALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYLKRMKNREERSQHFFDTSVPLMDDGDD
NTLYHRGFTEDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCI
KTEDGLKQLHKAEQYQKKNRKMLVILILFVIIIVLIVVLVGVKSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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