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Report for CCDS1288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1288.1 Public Homo sapiens 1 KIFAP3 24 110 108 CCDS HistoryNCBI Gene:22920Re-query CCDS DB by CCDS ID:1288.1Re-query CCDS DB by GeneID:22920See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1288.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361580.7 ENSP00000354560.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361580.7Link to Ensembl Protein Viewer:ENSP00000354560.2Re-query CCDS DB by Nucleotide ID:ENST00000361580Re-query CCDS DB by Protein ID:ENSP00000354560
Original member Current member NCBI NM_014970.4 NP_055785.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014970.4Link to Protein Sequence:NP_055785.2Re-query CCDS DB by Nucleotide ID:NM_014970Re-query CCDS DB by Protein ID:NP_055785Link to BLAST:NP_055785.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055785.2 792 Q92845-1 792 100% 0 0

Chromosomal Locations for CCDS 1288.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 169921676 169921781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169954011 169954110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169961046 169961235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169972513 169972598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169978085 169978183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169981972 169982097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169982702 169982867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169983270 169983382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169984582 169984690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169992155 169992255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170016462 170016624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170024418 170024596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170031886 170031984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170034372 170034496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170035454 170035553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170038290 170038431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170039233 170039288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170046712 170046866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170055305 170055436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170074436 170074467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2379 nt):
ATGCAAGGGGAGGACGCCAGATACCTCAAAAGGAAAGTTAAAGGAGGGAATATAGATGTACATCCATCAG
AAAAAGCACTCATTGTTCACTATGAAGTGGAAGCTACCATTCTTGGAGAAATGGGGGACCCCATGTTGGG
AGAACGAAAAGAATGTCAAAAAATCATTCGACTTAAGAGTCTCAATGCCAACACAGATATAACTTCCCTG
GCAAGGAAGGTGGTTGAAGAATGTAAACTCATTCATCCTTCAAAACTAAATGAGGTAGAACAGCTGTTGT
ACTATCTACAGAACCGCCGTGATTCATTGTCAGGAAAAGAGAAAAAAGAAAAATCAAGCAAGCCTAAAGA
TCCACCTCCTTTTGAAGGAATGGAGATTGATGAAGTTGCTAACATTAATGACATGGATGAATATATTGAG
TTATTATATGAAGATATTCCTGACAAAGTTCGGGGTTCTGCTTTGATCCTGCAGCTTGCTCGAAATCCTG
ATAACTTGGAAGAACTACTATTGAATGAAACTGCCCTTGGTGCATTAGCAAGGGTCCTGAGAGAAGACTG
GAAGCAAAGTGTCGAGTTAGCTACAAACATAATTTACATCTTTTTTTGTTTCTCCAGCTTTTCTCAATTT
CATGGACTTATTACTCACTATAAAATTGGAGCTCTGTGTATGAATATTATTGATCATGAGTTAAAAAGAC
ATGAGCTTTGGCAAGAAGAACTCTCAAAGAAGAAGAAAGCTGTTGATGAAGACCCTGAAAACCAAACCTT
GAGAAAGGATTATGAAAAAACCTTTAAAAAGTACCAGGGGCTTGTGGTAAAACAGGAACAGCTATTACGA
GTTGCTCTTTATTTGCTTCTGAATCTTGCTGAGGATACTCGTACCGAACTGAAAATGAGGAACAAGAACA
TAGTTCACATGTTGGTGAAAGCCCTTGATCGGGACAATTTTGAGCTGCTAATTTTAGTTGTGTCATTCTT
GAAGAAACTCAGCATTTTTATGGAGAATAAAAATGATATGGTGGAAATGGATATTGTTGAAAAACTGGTG
AAAATGATACCTTGTGAGCATGAAGACCTGCTGAATATCACCCTCCGACTTTTACTAAACCTATCCTTTG
ACACAGGACTGAGGAATAAGATGGTACAAGTTGGACTGCTTCCCAAGCTCACTGCACTCCTAGGCAATGA
CAACTACAAACAAATAGCAATGTGTGTTCTTTACCACATAAGCATGGATGACCGCTTTAAATCAATGTTT
GCATACACTGACTGTATACCACAGTTAATGAAGATGCTGTTTGAATGTTCAGATGAACGAATTGACTTGG
AACTCATTTCTTTCTGCATTAATCTTGCTGCTAACAAAAGAAATGTACAGCTTATCTGTGAAGGAAATGG
GCTGAAGATGCTCATGAAGAGGGCTCTGAAGTTTAAGGATCCATTGCTGATGAAAATGATTAGAAACATT
TCTCAGCATGATGGACCAACTAAAAATCTGTTTATTGATTATGTTGGGGACCTTGCAGCCCAGATCTCTA
ATGATGAAGAAGAGGAGTTTGTGATTGAATGTTTGGGAACTCTTGCAAACTTGACCATTCCAGACTTAGA
CTGGGAATTGGTTCTTAAAGAATATAAGTTGGTTCCATACCTCAAGGATAAACTAAAACCAGGTGCTGCA
GAAGATGATCTTGTTTTAGAAGTGGTTATAATGATTGGAACTGTATCCATGGATGACTCTTGTGCTGCAT
TGCTAGCCAAATCTGGCATAATCCCTGCACTCATTGAATTGCTAAATGCTCAACAAGAAGATGATGAATT
TGTGTGTCAGATAATTTATGTCTTCTACCAGATGGTTTTCCACCAAGCCACAAGAGACGTCATAATCAAG
GAAACACAGGCTCCAGCATATCTCATAGACCTAATGCATGATAAGAATAATGAAATCCGAAAGGTCTGTG
ATAATACATTAGATATTATAGCGGAATATGATGAAGAATGGGCTAAGAAAATTCAGAGTGAAAAGTTTCG
CTGGCATAACTCTCAGTGGCTGGAGATGGTAGAGAGTCGTCAGATGGATGAGAGTGAGCAGTACTTGTAT
GGTGATGATCGAATTGAGCCATACATTCATGAAGGAGATATTCTCGAAAGACCTGACCTTTTCTACAACT
CAGATGGATTAATTGCCTCTGAAGGAGCCATAAGTCCCGATTTCTTCAATGATTACCACCTTCAAAATGG
AGATGTTGTTGGGCAGCATTCATTTCCTGGCAGCCTTGGAATGGATGGCTTTGGCCAACCAGTTGGCATT
CTTGGACGCCCTGCCACAGCATATGGATTCCGCCCTGATGAACCTTACTACTATGGCTATGGATCTTGA

Translation (792 aa):
MQGEDARYLKRKVKGGNIDVHPSEKALIVHYEVEATILGEMGDPMLGERKECQKIIRLKSLNANTDITSL
ARKVVEECKLIHPSKLNEVEQLLYYLQNRRDSLSGKEKKEKSSKPKDPPPFEGMEIDEVANINDMDEYIE
LLYEDIPDKVRGSALILQLARNPDNLEELLLNETALGALARVLREDWKQSVELATNIIYIFFCFSSFSQF
HGLITHYKIGALCMNIIDHELKRHELWQEELSKKKKAVDEDPENQTLRKDYEKTFKKYQGLVVKQEQLLR
VALYLLLNLAEDTRTELKMRNKNIVHMLVKALDRDNFELLILVVSFLKKLSIFMENKNDMVEMDIVEKLV
KMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLLPKLTALLGNDNYKQIAMCVLYHISMDDRFKSMF
AYTDCIPQLMKMLFECSDERIDLELISFCINLAANKRNVQLICEGNGLKMLMKRALKFKDPLLMKMIRNI
SQHDGPTKNLFIDYVGDLAAQISNDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPYLKDKLKPGAA
EDDLVLEVVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQEDDEFVCQIIYVFYQMVFHQATRDVIIK
ETQAPAYLIDLMHDKNNEIRKVCDNTLDIIAEYDEEWAKKIQSEKFRWHNSQWLEMVESRQMDESEQYLY
GDDRIEPYIHEGDILERPDLFYNSDGLIASEGAISPDFFNDYHLQNGDVVGQHSFPGSLGMDGFGQPVGI
LGRPATAYGFRPDEPYYYGYGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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