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Report for CCDS12577.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12577.1 Public Homo sapiens 19 HNRNPUL1 24 110 108 CCDS HistoryNCBI Gene:11100Re-query CCDS DB by CCDS ID:12577.1Re-query CCDS DB by GeneID:11100See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12577.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000593587.5 ENSP00000472629.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000593587.5Link to Ensembl Protein Viewer:ENSP00000472629.1Re-query CCDS DB by Nucleotide ID:ENST00000593587Re-query CCDS DB by Protein ID:ENSP00000472629
Original member Current member EBI ENST00000595018.5 ENSP00000473132.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000595018.5Link to Ensembl Protein Viewer:ENSP00000473132.1Re-query CCDS DB by Nucleotide ID:ENST00000595018Re-query CCDS DB by Protein ID:ENSP00000473132
Original member Current member NCBI NM_001321208.2 NP_001308137.1 Accepted alive Link to Nucleotide Sequence:NM_001321208.2Link to Protein Sequence:NP_001308137.1Re-query CCDS DB by Nucleotide ID:NM_001321208Re-query CCDS DB by Protein ID:NP_001308137Link to BLAST:NP_001308137.1
Original member Current member NCBI NM_001321211.2 NP_001308140.1 Accepted alive Link to Nucleotide Sequence:NM_001321211.2Link to Protein Sequence:NP_001308140.1Re-query CCDS DB by Nucleotide ID:NM_001321211Re-query CCDS DB by Protein ID:NP_001308140Link to BLAST:NP_001308140.1
Original member Current member NCBI NM_144732.5 NP_653333.1 Accepted alive Link to Nucleotide Sequence:NM_144732.5Link to Protein Sequence:NP_653333.1Re-query CCDS DB by Nucleotide ID:NM_144732Re-query CCDS DB by Protein ID:NP_653333Link to BLAST:NP_653333.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308137.1 756 Q9BUJ2-4 756 100% 0 0
NP_001308140.1 756 Q9BUJ2-4 756 100% 0 0
NP_653333.1 756 Q9BUJ2-4 756 100% 0 0

Chromosomal Locations for CCDS 12577.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 41268228 41268345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41272082 41272235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41273982 41274055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41276159 41276298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41279077 41279176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41281163 41281275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41292245 41292511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41294338 41294460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41294558 41294686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41301536 41301704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41302665 41302949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41303972 41304261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41305676 41305867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41306449 41306565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2271 nt):
ATGGACAATATTACCAGGCAGAACCAATTCTACGATACCCAAGTCATCAAACAAGAAAACGAGTCAGGCT
ACGAGAGGAGACCACTGGAAATGGAGCAGCAGCAGGCCTATCGTCCAGAAATGAAGACAGAGATGAAGCA
AGGAGCACCCACCAGCTTCCTCCCGCCTGAAGCTTCTCAACTCAAGCCAGACAGGCAGCAATTCCAGAGT
CGAAAGAGGCCTTATGAAGAAAACCGGGGACGGGGGTACTTTGAGCACCGAGAGGATAGGAGGGGCCGCT
CTCCTCAGCCTCCTGCTGAAGAGGATGAAGATGACTTTGATGATACCCTTGTTGCTATTGACACCTATAA
CTGCGACCTCCACTTCAAGGTGGCCCGAGATCGGAGTAGTGGCTATCCGCTCACAATTGAGGGCTTTGCA
TACCTGTGGTCAGGAGCCCGTGCCAGCTATGGGGTCAGAAGGGGCCGTGTATGCTTCGAGATGAAGATCA
ATGAGGAAATCTCCGTGAAGCACCTTCCGTCTACAGAGCCTGACCCCCACGTGGTCCGTATCGGCTGGTC
CCTGGACTCCTGCAGCACCCAGCTAGGCGAAGAGCCTTTCTCCTATGGCTATGGAGGCACTGGGAAGAAG
TCCACCAATAGCCGGTTTGAAAACTACGGAGACAAGTTTGCAGAGAACGATGTGATTGGCTGCTTTGCGG
ATTTTGAATGTGGAAATGACGTGGAACTGTCTTTTACCAAGAATGGAAAGTGGATGGGCATTGCTTTCCG
AATCCAGAAGGAAGCCTTGGGGGGTCAGGCCCTCTATCCTCATGTCCTGGTGAAGAATTGCGCAGTGGAG
TTCAACTTCGGACAGAGAGCAGAGCCCTACTGTTCTGTCCTCCCGGGGTTTACCTTCATCCAGCACCTTC
CCCTTAGTGAGCGTATCCGGGGCACCGTTGGACCAAAGAGCAAGGCAGAATGTGAGATTCTGATGATGGT
GGGCCTGCCTGCTGCTGGCAAGACCACATGGGCCATCAAACATGCAGCCTCCAACCCTTCCAAGAAGTAC
AACATCCTGGGTACCAATGCCATCATGGATAAGATGCGGGTGATGGGCCTACGCCGGCAGCGGAACTATG
CTGGCCGCTGGGATGTCCTGATCCAGCAGGCCACCCAGTGCCTCAACCGCCTCATCCAGATTGCTGCCCG
CAAGAAACGCAACTATATCCTAGATCAGACAAATGTTTATGGGTCAGCCCAGAGACGAAAAATGAGACCA
TTTGAAGGCTTCCAGCGCAAAGCTATTGTAATTTGTCCCACTGACGAGGACCTAAAAGACCGAACAATAA
AGCGAACCGACGAGGAAGGGAAGGATGTCCCAGATCATGCGGTCTTAGAAATGAAAGCCAACTTCACGTT
GCCAGATGTTGGGGACTTCCTGGATGAGGTTCTGTTCATTGAGCTGCAGCGGGAGGAAGCGGACAAGCTA
GTGAGGCAGTACAACGAGGAAGGCCGCAAGGCTGGGCCACCCCCTGAAAAGCGCTTTGACAACCGAGGTG
GTGGTGGCTTCCGGGGCCGCGGGGGTGGTGGTGGCTTCCAGCGCTATGAAAACCGAGGACCCCCTGGAGG
CAACCGTGGCGGCTTCCAGAACCGAGGGGGAGGCAGCGGTGGAGGAGGCAACTACCGAGGAGGTTTCAAC
CGCAGCGGAGGTGGTGGCTATAGCCAGAACCGCTGGGGTAACAACAACCGGGATAACAACAACTCCAACA
ACAGAGGCAGCTACAACCGGGCTCCCCAGCAACAGCCGCCACCACAGCAGCCTCCGCCACCACAGCCACC
ACCCCAGCAGCCACCGCCACCACCCAGCTACAGCCCTGCTCGGAACCCCCCAGGGGCCAGCACCTACAAT
AAGAACAGCAACATCCCTGGCTCAAGCGCCAATACCAGCACCCCCACCGTCAGCAGCTACAGCCCTCCAC
AGCCGAGTTACAGCCAGCCACCCTACAACCAGGGAGGTTACAGCCAGGGCTACACAGCCCCACCGCCTCC
ACCTCCACCACCACCTGCCTACAACTATGGGAGCTACGGCGGTTACAACCCGGCCCCCTATACCCCACCG
CCACCCCCCACTGCACAGACCTACCCTCAGCCCAGCTATAACCAGTATCAGCAGTATGCCCAGCAGTGGA
ACCAGTACTATCAGAACCAGGGCCAGTGGCCGCCATACTACGGGAACTACGACTACGGGAGCTACTCCGG
GAACACACAGGGTGGCACAAGTACACAGTAG

Translation (756 aa):
MDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQS
RKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFA
YLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKK
STNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVE
FNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKY
NILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRP
FEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKL
VRQYNEEGRKAGPPPEKRFDNRGGGGFRGRGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGGNYRGGFN
RSGGGGYSQNRWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYN
KNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYSQGYTAPPPPPPPPPAYNYGSYGGYNPAPYTPP
PPPTAQTYPQPSYNQYQQYAQQWNQYYQNQGQWPPYYGNYDYGSYSGNTQGGTSTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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