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Report for CCDS11321.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11321.1 Public Homo sapiens 17 SYNRG 24 110 108 CCDS HistoryNCBI Gene:11276Re-query CCDS DB by CCDS ID:11321.1Re-query CCDS DB by GeneID:11276See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11321.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000612223.5 ENSP00000483453.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000612223.5Link to Ensembl Protein Viewer:ENSP00000483453.1Re-query CCDS DB by Nucleotide ID:ENST00000612223Re-query CCDS DB by Protein ID:ENSP00000483453
Original member Current member NCBI NM_007247.6 NP_009178.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007247.6Link to Protein Sequence:NP_009178.3Re-query CCDS DB by Nucleotide ID:NM_007247Re-query CCDS DB by Protein ID:NP_009178Link to BLAST:NP_009178.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009178.3 1314 Q9UMZ2-1 1314 100% 0 0

Chromosomal Locations for CCDS 11321.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37518940 37519071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37520179 37520214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37520538 37520648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37535979 37536127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37538324 37538420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37539192 37539245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37540380 37540543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37541972 37542565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37553115 37554059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37561195 37561257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37561471 37561589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37568791 37568924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37570637 37570885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37571791 37571987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37576341 37576418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37577380 37577613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37584648 37584759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37585325 37585430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37586419 37586549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37596223 37596344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37600363 37600403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37609279 37609355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3945 nt):
ATGGCGCTGCGGCCAGGAGCTGGTTCTGGTGGCGGCGGGGCCGCGGGAGCTGGCGCGGGGTCCGCCGGGG
GAGGCGGCTTCATGTTTCCTGTTGCAGGTGGGATAAGACCCCCTCAAGCAGGCCTGATGCCGATGCAGCA
ACAAGGATTTCCTATGGTCTCTGTCATGCAGCCTAATATGCAAGGCATTATGGGAATGAATTACAGCTCT
CAGATGTCCCAAGGACCTATTGCTATGCAGGCAGGAATACCAATGGGACCAATGCCAGCAGCGGGAATGC
CTTACCTAGGACAAGCACCCTTCCTGGGCATGCGTCCTCCAGGCCCACAGTACACTCCAGACATGCAGAA
GCAGTTTGCCGAAGAGCAGCAGAAACGATTTGAACAGCAGCAAAAACTCTTAGAAGAAGAAAGAAAAAGA
CGCCAGTTTGAAGAGCAGAAGCAAAAGCTCAGACTTTTGAGCAGTGTGAAACCCAAGACAGGAGAGAAGA
GTAGAGATGATGCTTTGGAAGCCATAAAAGGAAATTTAGATGGGTTTTCCAGAGATGCAAAAATGCACCC
TACTCCAGCATCGCACCCCAAGAAACCAGGCCCTTCCTTGGAGGAGAAGTTCCTAGTATCTTGTGATATA
AGTACATCTGGGCAGGAACAAATTAAATTAAATACTTCTGAAGTTGGCCACAAAGCCCTAGGCCCAGGTT
CCAGTAAGAAGTATCCCAGTTTAATGGCCAGTAACGGGGTTGCTGTAGATGGATGTGTAAGTGGTACCAC
CACTGCAGAGGCAGAAAATACTTCAGATCAAAACCTGTCAATTGAAGAGAGTGGTGTGGGAGTATTTCCC
TCACAGGATCCTGCTCAGCCCAGAATGCCTCCTTGGATTTACAATGAGAGTTTGGTTCCAGATGCCTATA
AGAAAATCTTAGAAACCACAATGACTCCAACTGGAATAGATACTGCCAAACTGTATCCCATTCTGATGTC
ATCTGGGCTTCCCAGGGAAACTCTTGGACAGATATGGGCCTTAGCTAATCGAACTACACCTGGCAAACTT
ACAAAAGAAGAACTTTATACCGTTCTAGCCATGATAGCGGTAACACAGAGGGGCGTTCCTGCAATGAGTC
CTGATGCTTTAAACCAGTTCCCAGCAGCTCCTATTCCAACTTTAAGTGGCTTTTCTATGACTCTGCCTAC
ACCGGTGAGTCAGCCAACTGTGATACCTTCAGGTCCTGCGGGCTCCATGCCCCTCAGCCTTGGACAGCCA
GTCATGGGCATTAACCTTGTTGGACCAGTGGGTGGAGCTGCAGCCCAGGCTTCTAGTGGTTTCATACCAA
CCTACCCTGCAAATCAGGTAGTAAAGCCAGAAGAAGATGACTTCCAGGATTTTCAAGATGCTTCTAAGTC
AGGATCCCTTGATGACTCATTCAGTGATTTCCAAGAGTTGCCTGCTTCTTCAAAAACAAGTAACTCCCAG
CATGGAAACAGTGCCCCTTCTTTGTTGATGCCACTTCCTGGAACTAAAGCATTGCCTTCAATGGACAAAT
ATGCTGTGTTTAAAGGAATTGCAGCTGACAAGTCCTCTGAAAATACTGTTCCACCTGGAGATCCTGGTGA
TAAATATAGTGCTTTCAGAGAACTTGAACAGACAGCAGAGAATAAACCTTTAGGAGAAAGCTTTGCAGAA
TTCAGATCTGCAGGAACTGATGATGGTTTCACCGATTTTAAAACAGCCGATAGTGTATCACCACTAGAGC
CACCAACAAAAGACAAAACTTTTCCACCATCCTTCCCCTCAGGAACTATACAACAGAAACAACAAACACA
AGTGAAAAACCCTCTGAACTTAGCAGACCTAGATATGTTTTCCTCAGTTAATTGCAGCAGCGAGAAACCA
TTGTCTTTTTCAGCTGTGTTTAGCACATCAAAATCAGTTTCTACACCACAGTCAACAGGTTCTGCTGCTA
CTATGACAGCATTGGCAGCAACAAAAACTTCTAGTTTGGCTGATGATTTTGGAGAATTCAGCCTTTTTGG
GGAATATTCTGGTCTAGCACCTGTTGGGGAGCAGGATGACTTTGCAGATTTTATGGCTTTCAGTAATAGC
TCTATTTCATCTGAGCAAAAGCCGGATGACAAATATGATGCCCTTAAAGAGGAAGCCAGTCCTGTTCCTC
TAACCAGCAACGTGGGCAGCACAGTGAAGGGTGGACAAAACTCGACTGCTGCGTCTACCAAGTACGATGT
CTTCAGACAACTTTCTCTGGAAGGGTCTGGACTAGGTGTTGAAGACCTGAAAGATAACACTCCTTCAGGA
AAAAGTGATGATGATTTTGCTGACTTCCACTCCAGTAAATTTTCTTCCATAAACTCGGACAAATCCCTGG
GAGAGAAAGCAGTGGCTTTCAGACACACCAAAGAAGACTCTGCATCAGTGAAGTCCTTAGATCTCCCTTC
CATTGGTGGCAGCAGTGTTGGCAAGGAGGACTCTGAAGATGCACTCTCTGTTCAGTTTGACATGAAATTG
GCTGATGTGGGAGGAGATCTTAAGCATGTCATGTCTGATAGCTCTTTGGATTTACCAACAGTTAGTGGCC
AGCATCCTCCTGCTGCAGATATAGAGGACTTAAAATATGCTGCTTTTGGAAGCTACAGTAGCAATTTTGC
AGTGAGCACACTTACAAGCTATGACTGGTCAGACAGGGATGATGCAACTCAGGGCAGAAAACTCTCTCCA
TTTGTCCTCTCAGCAGGAAGTGGATCCCCCTCAGCCACCTCAATTCTTCAAAAGAAAGAGACTTCATTTG
GCAGTTCTGAAAACATCACCATGACATCTCTCTCCAAAGTAACGACCTTTGTAAGTGAAGATGCTCTTCC
AGAGACCACCTTCCCAGCTCTTGCCAGTTTTAAAGACACGATTCCTCAGACCAGTGAGCAAAAGGAATAT
GAAAACAGAGACTATAAAGATTTCACAAAACAGGACCTGCCTACGGCTGAACGGAGCCAGGAGGCCACGT
GTCCCAGCCCAGCGTCCAGTGGTGCCTCTCAAGAAACCCCGAACGAATGTTCGGATGACTTTGGAGAGTT
TCAAAGTGAAAAGCCCAAAATCAGCAAATTTGACTTCTTAGTAGCCACTTCACAAAGCAAAATGAAATCC
AGTGAAGAAATGATCAAAAGTGAGCTGGCAACCTTTGACCTTTCTGTTCAAGGATCACACAAGAGGAGTT
TGAGCCTTGGTGATAAAGAAATAAGCCGTTCTTCTCCTTCTCCAGCTTTGGAGCAGCCTTTCAGAGACCG
TTCCAATACTCTGAATGAGAAGCCCGCCCTGCCCGTCATCCGAGACAAGTACAAAGACCTGACGGGAGAG
GTGGAGGAAAATGAGAGATATGCATATGAATGGCAGAGATGCCTGGGGAGTGCCCTGAATGTCATTAAGA
AGGCAAATGATACCTTAAATGGAATCAGTAGTAGTTCTGTTTGCACAGAAGTAATTCAGTCAGCTCAAGG
CATGGAATATTTATTAGGTGTTGTTGAAGTGTACAGGGTAACCAAGCGTGTGGAGCTGGGGATAAAAGCC
ACTGCAGTGTGCAGTGAGAAACTCCAGCAGTTGCTGAAGGACATCGATAAAGTATGGAATAACCTAATCG
GCTTCATGTCACTCGCCACACTCACACCAGATGAAAACTCGCTGGATTTTTCCTCCTGTATGTTACGGCC
TGGGATTAAAAATGCTCAGGAGCTTGCCTGTGGAGTGTGCCTCTTGAATGTGGACTCGAGGAGCCGGAAA
GAAGAGAAGCCTGCAGAAGAACATCCTAAAAAAGCATTCAACTCAGAAACAGACAGTTTCAAGCTGGCCT
ATGGAGGGCACCAGTATCACGCCAGCTGTGCCAACTTCTGGATCAACTGTGTCGAACCAAAGCCTCCTGG
CCTCGTCCTGCCTGACCTGCTCTGA

Translation (1314 aa):
MALRPGAGSGGGGAAGAGAGSAGGGGFMFPVAGGIRPPQAGLMPMQQQGFPMVSVMQPNMQGIMGMNYSS
QMSQGPIAMQAGIPMGPMPAAGMPYLGQAPFLGMRPPGPQYTPDMQKQFAEEQQKRFEQQQKLLEEERKR
RQFEEQKQKLRLLSSVKPKTGEKSRDDALEAIKGNLDGFSRDAKMHPTPASHPKKPGPSLEEKFLVSCDI
STSGQEQIKLNTSEVGHKALGPGSSKKYPSLMASNGVAVDGCVSGTTTAEAENTSDQNLSIEESGVGVFP
SQDPAQPRMPPWIYNESLVPDAYKKILETTMTPTGIDTAKLYPILMSSGLPRETLGQIWALANRTTPGKL
TKEELYTVLAMIAVTQRGVPAMSPDALNQFPAAPIPTLSGFSMTLPTPVSQPTVIPSGPAGSMPLSLGQP
VMGINLVGPVGGAAAQASSGFIPTYPANQVVKPEEDDFQDFQDASKSGSLDDSFSDFQELPASSKTSNSQ
HGNSAPSLLMPLPGTKALPSMDKYAVFKGIAADKSSENTVPPGDPGDKYSAFRELEQTAENKPLGESFAE
FRSAGTDDGFTDFKTADSVSPLEPPTKDKTFPPSFPSGTIQQKQQTQVKNPLNLADLDMFSSVNCSSEKP
LSFSAVFSTSKSVSTPQSTGSAATMTALAATKTSSLADDFGEFSLFGEYSGLAPVGEQDDFADFMAFSNS
SISSEQKPDDKYDALKEEASPVPLTSNVGSTVKGGQNSTAASTKYDVFRQLSLEGSGLGVEDLKDNTPSG
KSDDDFADFHSSKFSSINSDKSLGEKAVAFRHTKEDSASVKSLDLPSIGGSSVGKEDSEDALSVQFDMKL
ADVGGDLKHVMSDSSLDLPTVSGQHPPAADIEDLKYAAFGSYSSNFAVSTLTSYDWSDRDDATQGRKLSP
FVLSAGSGSPSATSILQKKETSFGSSENITMTSLSKVTTFVSEDALPETTFPALASFKDTIPQTSEQKEY
ENRDYKDFTKQDLPTAERSQEATCPSPASSGASQETPNECSDDFGEFQSEKPKISKFDFLVATSQSKMKS
SEEMIKSELATFDLSVQGSHKRSLSLGDKEISRSSPSPALEQPFRDRSNTLNEKPALPVIRDKYKDLTGE
VEENERYAYEWQRCLGSALNVIKKANDTLNGISSSSVCTEVIQSAQGMEYLLGVVEVYRVTKRVELGIKA
TAVCSEKLQQLLKDIDKVWNNLIGFMSLATLTPDENSLDFSSCMLRPGIKNAQELACGVCLLNVDSRSRK
EEKPAEEHPKKAFNSETDSFKLAYGGHQYHASCANFWINCVEPKPPGLVLPDLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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