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Report for CCDS10641.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10641.1 Public Homo sapiens 16 ATXN2L 24 110 108 CCDS HistoryNCBI Gene:11273Re-query CCDS DB by CCDS ID:10641.1Re-query CCDS DB by GeneID:11273See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10641.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336783.9 ENSP00000338718.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336783.9Link to Ensembl Protein Viewer:ENSP00000338718.4Re-query CCDS DB by Nucleotide ID:ENST00000336783Re-query CCDS DB by Protein ID:ENSP00000338718
Original member Current member NCBI NM_007245.4 NP_009176.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007245.4Link to Protein Sequence:NP_009176.2Re-query CCDS DB by Nucleotide ID:NM_007245Re-query CCDS DB by Protein ID:NP_009176Link to BLAST:NP_009176.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009176.2 1075 Q8WWM7-1 1075 100% 0 0

Chromosomal Locations for CCDS 10641.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 28823260 28823558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28825366 28825402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28825624 28825680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28825770 28825841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28826240 28826390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28826862 28826986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28829401 28829492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28829858 28830058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28830615 28830790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28830962 28831072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28832205 28832399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28832496 28832567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28832817 28832887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28833059 28833354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28833439 28833508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28834065 28834211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28834343 28834415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28834506 28834693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28835058 28835187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28835278 28835399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28835549 28835758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28835933 28836265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3228 nt):
ATGTTGAAGCCTCAGCCGCTACAACAGCCCTCCCAGCCCCAGCAGCCGCCCCCCACGCAACAGGCCGTGG
CC
CGTCGGCCCCCCGGGGGCACCAGCCCTCCCAACGGCGGCCTCCCGGGGCCGCTGGCCACCTCTGCGGC
T
CCTCCCGGGCCTCCAGCGGCCGCCTCCCCCTGCCTGGGGCCTGTGGCCGCTGCCGGGAGCGGGCTCCGC
CGG
GGAGCCGAAGGCATCTTGGCGCCGCAGCCGCCGCCGCCGCAGCAACACCAGGAGAGGCCGGGGGCAG
CC
GCCATCGGCAGCGCCAGGGGACAGAGCACAGGAAAGGGACCCCCACAGTCACCTGTGTTTGAAGGCGT
C
TACAACAATTCCAGAATGCTGCATTTCCTTACAGCTGTTGTGGGCTCCACTTGTGATGTAAAGGTGAAA
AAT
GGTACCACTTATGAGGGTATCTTCAAGACGCTAAGCTCAAAGTTTGAACTAGCCGTGGATGCTGTGC
AC
CGGAAAGCATCTGAGCCAGCAGGTGGCCCTCGTCGGGAGGACATTGTGGACACCATGGTGTTTAAGCC
A
AGTGATGTCATGCTTGTTCACTTCCGAAATGTTGACTTCAACTATGCTACTAAAGACAAGTTCACCGAT
TCA
GCCATTGCCATGAACTCGAAAGTGAATGGGGAACACAAAGAGAAGGTGCTTCAGCGCTGGGAGGGGG
GT
GACAGCAACAGCGACGACTATGACCTCGAGTCTGACATGTCCAATGGATGGGACCCCAATGAAATGTT
C
AAGTTCAATGAGGAGAACTACGGTGTGAAGACTACCTATGATAGCAGTCTTTCTTCTTATACGGTGCCC
TTA
GAAAAGGACAACTCAGAAGAGTTTCGTCAGCGAGAGCTGCGTGCGGCCCAGTTGGCTCGAGAGATTG
AA
TCAAGCCCCCAGTACCGCCTACGGATCGCCATGGAGAACGACGATGGGCGCACTGAAGAGGAGAAGCA
C
AGTGCAGTCCAGCGGCAGGGCTCAGGGCGGGAGAGCCCCAGCTTGGCATCCAGGGAGGGGAAGTATATC
CCT
CTGCCTCAACGAGTCCGGGAAGGTCCCCGGGGAGGAGTTCGATGCAGCAGCTCTCGGGGCGGTCGGC
CT
GGCCTTAGCTCTTTGCCACCTCGTGGCCCTCACCATCTGGACAACAGCAGCCCTGGCCCAGGTTCTGA
G
GCCCGTGGTATCAATGGAGGCCCTTCCCGCATGTCCCCAAAGGCACAACGGCCTCTGAGAGGTGCCAAG
ACT
CTGTCTTCGCCCAGTAATAGGCCTTCTGGAGAAACTTCTGTTCCACCTCCTCCTGCAGTGGGCCGGA
TG
TATCCCCCGCGTTCTCCCAAGTCTGCTGCCCCTGCCCCAATCTCAGCTTCCTGTCCAGAGCCTCCCAT
C
GGCTCGGCAGTGCCAACCTCTTCAGCCTCCATCCCTGTGACCTCATCAGTCTCAGATCCTGGAGTGGGC
TCC
ATTTCTCCAGCTTCTCCAAAGATCTCCCTGGCCCCCACAGATGTAAAAGAACTCTCTACCAAGGAAC
CT
GGGAGAACTCTGGAGCCCCAGGAGCTGGCTCGGATAGCTGGGAAAGTCCCTGGTCTTCAGAATGAACA
G
AAACGATTCCAACTGGAAGAACTGAGAAAGTTTGGGGCCCAGTTTAAGCTTCAGCCCAGTAGCTCCCCT
GAG
AACAGCCTGGATCCTTTTCCTCCCCGGATCTTAAAGGAGGAGCCCAAAGGAAAGGAGAAAGAGGTTG
AT
GGTCTGTTGACTTCAGAGCCCATGGGGTCTCCCGTCTCCTCCAAGACAGAGTCCGTATCGGATAAGGA
G
GACAAACCACCCCTGGCACCATCAGGAGGCACTGAGGGGCCAGAGCAGCCCCCACCACCTTGTCCAAGC
CAA
ACTGGCAGCCCCCCGGTGGGCCTCATCAAGGGAGAAGACAAAGATGAGGGCCCTGTTGCTGAACAAG
TA
AAGAAATCAACGTTGAACCCTAATGCTAAGGAGTTCAATCCTACAAAGCCTCTGCTGTCTGTGAATAA
A
TCCACCAGTACCCCAACTTCTCCGGGGCCCCGGACTCATTCAACTCCCTCCATCCCGGTGCTGACAGCA
GGC
CAGAGTGGGCTATACAGCCCCCAGTACATCTCCTACATACCTCAGATCCACATGGGACCAGCTGTGC
AG
GCACCTCAGATGTATCCATATCCTGTATCCAATTCAGTGCCTGGGCAGCAGGGCAAGTACCGGGGAGC
A
AAAGGCTCCCTTCCTCCGCAGCGCTCGGACCAACACCAGCCAGCCTCAGCCCCGCCGATGATGCAGGCC
GCC
GCGGCTGCTGGCCCGCCTCTGGTGGCTGCCACGCCCTATTCTTCCTACATCCCCTACAACCCTCAGC
AG
TTCCCAGGCCAGCCAGCCATGATGCAGCCCATGGCCCACTACCCCTCACAGCCGGTGTTTGCCCCCAT
G
CTTCAGAGCAACCCACGCATGCTGACGTCGGGCAGCCATCCCCAGGCCATCGTGTCATCCTCTACCCCT
CAG
TACCCTTCTGCAGAGCAGCCTACCCCCCAAGCCCTTTATGCCACTGTTCACCAGTCCTACCCACACC
AT
GCCACACAGCTCCATGCCCACCAGCCGCAGCCGGCTACCACGCCTACTGGAAGCCAGCCGCAGTCCCA
G
CATGCGGCCCCCAGTCCTGTCCAGCATCAGGCGGGGCAGGCCCCACACTTGGGCAGTGGACAGCCACAG
CAG
AATCTGTACCACCCAGGGGCCCTGACAGGCACGCCGCCCTCTCTGCCACCGGGACCTTCTGCCCAGT
CC
CCTCAGAGCAGCTTCCCCCAGCCAGCCGCTGTGTATGCCATCCACCACCAGCAGCTGCCCCACGGCTT
C
ACCAACATGGCCCATGTTACCCAGGCCCATGTCCAAACTGGAATCACAGCAGCCCCGCCCCCTCACCCT
GGG
GCTCCCCACCCGCCCCAGGTGATGCTGCTGCACCCACCCCAGAGTCATGGGGGGCCCCCCCAAGGCG
CG
GTGCCCCAGAGTGGGGTGCCTGCACTCTCAGCTTCCACACCCTCACCCTACCCCTACATCGGACACCC
C
CAAGGTGAGCAGCCTGGCCAGGCGCCTGGATTTCCAGGAGGAGCCGATGACAGGATTCGTGAGTTCTCA
TTA
GCTGGGGGAATTTGGCATGGAAGAGCTGAGGGGCTGCAGGTGGGGCAGGATGCACGGGTTCTGGGTG
GG
GAGTGA


Translation (1075 aa):
MLKPQPLQQPSQPQQPPPTQQAVARRPPGGTSPPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLR
R
GAEGILAPQPPPPQQHQERPGAAAIGSA
RGQSTGKGPPQSPVFEGVYNNSRMLHFLTAVVGSTCDVKVK
N
GTTYEGIFKTLSSK
FELAVDAVHRKASEPAGGPRREDIVDTMVFKPSDVMLVHFRNVDFNYATKDKFTD
S
AIAMNSKVNGEHKEKVLQRWEGGDSNSDDYDLESDM
SNGWDPNEMFKFNEENYGVKTTYDSSLSSYTVP
L
EKDNSEEFRQRELRAAQLAREIESSPQYRLRIAMENDDGRTEEEKHSAVQRQGSGRESPSLAS
REGKYI
P
LPQRVREGPRGGVRCSSSRGGRPGLSSLPPRGPHHLDNSSPGPGSEARGING
GPSRMSPKAQRPLRGAK
T
LSSPSNRPSGETSVPPPPA
VGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSVSDPGVG
S
ISPASPKISLAPTD
VKELSTKEPGRTLEPQELARIAGKVPGLQNEQKRFQLEELRKFGAQFKLQPSSSP
E
NSLDPFPPRILKEEPKGKEKEVDGLLTSEPMGSPVSSKTESVSDKEDKPPLAPSGGTEGPEQPPPPCPS
Q
TGSPPVGLIKGEDKDEGPVA
EQVKKSTLNPNAKEFNPTKPLLSVNKSTSTPTSPGPRTHSTPSIPVLTA
G
QSGLYSPQYISYIPQIHMGPAVQ
APQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQA
A
AAAGPPLVAATPYSSYIPYNPQQFPGQPAMMQPMAHYPSQ
PVFAPMLQSNPRMLTSGSHPQAIVSSSTP
Q
YPSAEQPTPQALY
ATVHQSYPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQ
Q
NLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYAIHHQQLPHGFTNMAHVTQ
AHVQTGITAAPPPHP
G
APHPPQVMLLHPPQSHGGPPQGAVPQSGVPALSASTPSPYPYIGHPQGEQPGQAPGFPGGADDRIREFS
L
AGGIWHGRAEGLQVGQDARVLGGE




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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