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Report for CCDS82868.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82868.1 Public Homo sapiens 3 PPM1L 24 110 108 CCDS HistoryNCBI Gene:151742Re-query CCDS DB by CCDS ID:82868.1Re-query CCDS DB by GeneID:151742See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82868.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295839.9 ENSP00000295839.9 Accepted alive Link to Ensembl Transcript Viewer:ENST00000295839.9Link to Ensembl Protein Viewer:ENSP00000295839.9Re-query CCDS DB by Nucleotide ID:ENST00000295839Re-query CCDS DB by Protein ID:ENSP00000295839
Original member Current member NCBI NM_001317911.2 NP_001304840.1 Accepted alive Link to Nucleotide Sequence:NM_001317911.2Link to Protein Sequence:NP_001304840.1Re-query CCDS DB by Nucleotide ID:NM_001317911Re-query CCDS DB by Protein ID:NP_001304840Link to BLAST:NP_001304840.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304840.1 233 Q5SGD2-3 233 100% 0 0

Chromosomal Locations for CCDS 82868.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 160842275 160842292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160961736 160961910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161065403 161065564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161068811 161069157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGCCTGCTTTTTCAACAACTGCAGCTGAATATGTAAAATCTCGACTCCCAGAGGCCCTTAAACAGCATC
TTCAGGACTACGAGAAAGACAAAGAAAATAGTGTATTATCTTACCAGACCATCCTTGAACAGCAGATTTT
GTCAATTGACCGAGAAATGCTAGAAAAATTGACTGTATCCTATGATGAAGCAGGCACAACGTGTTTGATT
GCTCTGCTATCAGATAAAGACCTCACTGTGGCCAACGTGGGTGACTCGCGCGGGGTCCTGTGTGACAAAG
ATGGGAACGCTATTCCTTTGTCTCATGATCACAAGCCTTACCAGTTGAAGGAAAGAAAGAGGATAAAGAG
AGCAGGTGGTTTCATCAGTTTCAATGGCTCCTGGAGGGTCCAGGGAATCCTGGCCATGTCTCGGTCCCTG
GGGGATTATCCGCTGAAAAATCTCAACGTGGTCATCCCAGACCCAGACATCCTGACCTTTGACCTGGACA
AGCTTCAGCCTGAGTTCATGATCTTGGCATCAGATGGTCTCTGGGATGCTTTCAGCAATGAAGAAGCAGT
TCGATTCATCAAGGAGCGCTTGGATGAACCTCACTTTGGGGCCAAGAGCATAGTTTTACAGTCATTTTAC
AGAGGCTGCCCTGACAATATAACAGTCATGGTGGTGAAGTTCAGAAATAGCAGCAAAACAGAAGAGCAGT
GA

Translation (233 aa):
MPAFSTTAAEYVKSRLPEALKQHLQDYEKDKENSVLSYQTILEQQILSIDREMLEKLTVSYDEAGTTCLI
ALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKPYQLKERKRIKRAGGFISFNGSWRVQGILAMSRSL
GDYPLKNLNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAVRFIKERLDEPHFGAKSIVLQSFY
RGCPDNITVMVVKFRNSSKTEEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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