NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45964.1 Public Homo sapiens 19 AP1M2 24 110 108 CCDS HistoryNCBI Gene:10053Re-query CCDS DB by CCDS ID:45964.1Re-query CCDS DB by GeneID:10053See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45964.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000250244.11 ENSP00000250244.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000250244.11Link to Ensembl Protein Viewer:ENSP00000250244.5Re-query CCDS DB by Nucleotide ID:ENST00000250244Re-query CCDS DB by Protein ID:ENSP00000250244
Original member Current member NCBI NM_005498.5 NP_005489.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005498.5Link to Protein Sequence:NP_005489.2Re-query CCDS DB by Nucleotide ID:NM_005498Re-query CCDS DB by Protein ID:NP_005489Link to BLAST:NP_005489.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005489.2 423 Q9Y6Q5-1 423 100% 0 0

Chromosomal Locations for CCDS 45964.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10573066 10573088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10574417 10574492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10574904 10575029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10577198 10577356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10578892 10578963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10579716 10579858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10581266 10581392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10581487 10581634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10581748 10581878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10583606 10583673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10583914 10584070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10587190 10587231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGTCCGCCTCGGCTGTCTTCATTCTGGACGTTAAGGGCAAGCCATTGATCAGCCGCAACTACAAGGGCG
ATGTGGCCATGAGCAAGATTGAGCACTTCATGCCTTTGCTGGTACAGCGGGAGGAGGAAGGCGCCCTGGC
CCCGCTGCTGAGCCACGGCCAGGTCCACTTCCTATGGATCAAACACAGCAACCTCTACTTGGTGGCCACC
ACATCGAAGAATGCCAATGCCTCCCTGGTGTACTCCTTCCTGTATAAGACAATAGAGGTATTCTGCGAAT
ACTTCAAGGAGCTGGAGGAGGAGAGCATCCGGGACAACTTTGTCATCGTCTACGAGTTGCTGGACGAGCT
CATGGACTTTGGCTTCCCGCAGACCACCGACAGCAAGATCCTGCAGGAGTACATCACTCAGCAGAGCAAC
AAGCTGGAGACGGGCAAGTCACGGGTGCCACCCACTGTCACCAACGCTGTGTCCTGGCGCTCCGAGGGTA
TCAAGTATAAGAAGAACGAGGTCTTCATTGATGTCATAGAGTCTGTCAACCTGCTGGTCAATGCCAACGG
CAGCGTCCTTCTGAGCGAAATCGTCGGTACCATCAAGCTCAAGGTGTTTCTGTCAGGAATGCCAGAGCTG
CGGCTGGGCCTCAATGACCGCGTGCTCTTCGAGCTCACTGGCCGCAGCAAGAACAAATCAGTAGAGCTGG
AGGATGTAAAATTCCACCAGTGCGTGCGGCTCTCTCGCTTTGACAACGACCGCACCATCTCCTTCATCCC
GCCTGATGGTGACTTTGAGCTCATGTCATACCGCCTCAGCACCCAGGTCAAGCCACTGATCTGGATTGAG
TCTGTCATTGAGAAGTTCTCCCACAGCCGCGTGGAGATCATGGTCAAGGCCAAGGGGCAGTTTAAGAAAC
AGTCAGTGGCCAACGGTGTGGAGATATCTGTGCCTGTACCCAGCGATGCCGACTCCCCCAGATTCAAGAC
CAGTGTGGGCAGCGCCAAGTATGTGCCGGAGAGAAACGTCGTGATTTGGAGTATTAAGTCTTTCCCGGGG
GGCAAGGAGTACTTGATGCGAGCCCACTTTGGCCTCCCCAGTGTGGAAAAGGAAGAGGTGGAGGGCCGGC
CCCCCATCGGGGTCAAGTTTGAGATCCCCTACTTCACCGTCTCTGGGATCCAGGTCCGATACATGAAGAT
CATTGAGAAAAGTGGTTACCAGGCCCTGCCCTGGGTTCGCTACATCACCCAGAGTGGCGATTACCAACTT
CGTACCAGCTAG

Translation (423 aa):
MSASAVFILDVKGKPLISRNYKGDVAMSKIEHFMPLLVQREEEGALAPLLSHGQVHFLWIKHSNLYLVAT
TSKNANASLVYSFLYKTIEVFCEYFKELEEESIRDNFVIVYELLDELMDFGFPQTTDSKILQEYITQQSN
KLETGKSRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVNLLVNANGSVLLSEIVGTIKLKVFLSGMPEL
RLGLNDRVLFELTGRSKNKSVELEDVKFHQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIE
SVIEKFSHSRVEIMVKAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPERNVVIWSIKSFPG
GKEYLMRAHFGLPSVEKEEVEGRPPIGVKFEIPYFTVSGIQVRYMKIIEKSGYQALPWVRYITQSGDYQL
RTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH